Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02608 ATGAGCCACAGTGGTTTGTGGTTTGTGGTATTTGGTGGTGGGGGAAGAAGAATATTACAAAAAAACCCCACTTTGTTCAGATACATTGCATGTAGGAAACCGTTCAGTGGTTCTTCTTCCGATCTTCAAACCTTCAGACAACTCCCTTTTTCTCATGCGTTCTTCCTCTCATCAATCACACAACGCCATACCTCTTCTTCTTGTTCCTCTTTTCTTCTTCGCTCTCCTTTTTGCTCTCCTTCGAGGGTTCTTTCGTCTCGAACGCTGTGGGGTTCTTCGCCCGGCTTTTATTCACCCGTACCCATGTCTAAAGTTCTTGGCTTTTCCGGAGGTGATGACTTTTGCCCTGGGGGATCAATCTACGCCAACCCCAAGGAAGCGAGTTTCTTCCTTCCCCTTGGCCCTCAAGTTGATGTATACTTTCCTCCCAGGAAGAGATCACGCGTCAACGCTCCATTCGTTTTCGATGGAGAATGGTTTGAGCAAAAGCAGAAAACCTCTATTGAAGCCTTACCAGATGAGTGTCTCTTTGAGATCTTCAGAAGGTTGCCCGCTGGCGAGGAAAGGAGTGCATGTGCTTGCGTTTCCAAGCGCTGGCTTATGCTTCTGAGCAGTATTTGCAAAGATGAAATCTGTGCCATGAAAAACACCAGCGCAGAAAACATTGAAAAGGATGGTTATGATGTAGAATTTGGAGGTGAGGGATACCTCTCCCGGAACTTGGAAGGAAAGAAGGCCACGGATGTTAGACTAGCTGCCATAGCTGTTGGAACTGCATCTCGCGGAGGGTTGGGGAAGCTTTCCATCCGAGGAAGCAACATCTGTCGTGGGGTGACTAGTCTTGGTCTCAGGGCAGTTGCTCATGGATGCCCTTCTTTGAAGTCTTTTTCTCTATGGAACGTTTCTACTGTTGGTGACGAGGGCCTAATCGAGATCGCTAACGGTTGTCACCAGCTAGAAAAGCTCGACCTTTGCAAGTGCCCTGCTGTTACTGATAAGGCTTTGGTTGCAATTGCAAAGAACTGCCAGAATCTGACCGAGCTTTCCTTGGAATCGTGCCCTAATGTTGGTAATGAAGGTCTGCGAGCTATTGGGAAGTTCTGCCCCAACCTAAGATCCGTAACCATCAAGGACTGCACAGGTGTTAGCGATCAGGGAATTGCTGGATTGTTTTCAACTTCTTTGGTTCTGACGAAGGTGAAGCTCCAAGCACTGTCTGTGTCAGATCTCTCTCTAGCCGTTATTGGACATTATGGGAAGTCTGTTACTGATCTTGTCCTTAATTGCCTCCCAAATGTCAGCGAGAAGGGGTTCTGGGTAATGGGAAATGGTAGTGGGTTGCAGAAGCTGAAGTCACTCACAGTTGCTTCATGCAGGGGAGTAACCGATATTGGCCTTGAAGCTGTAGGAAAGGGTTGCCCAAATCTGAAAATTGCACACCTTCACAAGTGTGCCTTTTTGTCAGACAATGGGTTGATATCGTTTGCCAAGGCTGCTTCATCACTCGAGAGCCTTCGATTGGAAGAGTGCCACAGAATCACCCAATTTGGGTTTTTCGGTGTCCTTTTTAACTGTGGTGCAAAATTGAAGTCCATCTCTTTGGTGAGGTGCTACGGAATCAAAGACATGAATTTGGTGTTGCCGACCATTTCTCCTTGTGAATCCCTTAGATCATTGACTATCTGCAACTGCCCTGGATTTGGCAATGCCTCACTCTCTGTACTGGGAAAGCTGTGCCCTAAGCTTCAGCATGTTGAACTGAGTGGACTCGATGGAGTGACTGATGCCGGGGTTCTTCCACTGCTAGAGAGTTCTGAGGCTGGTTTGGTTAAAGTGAACCTCAGTGGCTGCACAAATGTCACAGACAAAGTAGTTTCATCCTTGGCCAATCTTCATGGTTGGACTCTTGAGAACCTAAACCTTGATGGTTGTAAAAAAATCAGTGATGCTAGCTTGATGGCAATTGCTGAAAACTGTGCATTGCTATGCGATCTTGATGTCTCCAAGTGCTCAATCACAGATGCTGGGATAGCAGCCCTGGCACATGCCCAACAGATTAATCTGCAAATTCTCTCTTTGTCAGGTTGCGCTTTGGTCTCAGACAGGAGCTTGCCCGCCCTGAGAAAATTGGGCCGGACCCTTTTGGGACTGAACATCCAGCACTGCAATGCAATTAACAGTGGCACCGTTGACATGCTTGTAGAGCTTCTCTGGAGGTCATCATCATCATCATCATCATCCATCATCCAGCTACTCGGTTCCCTTTTTCCGGAGTCTGCAACAACAAGACAGGAACAGCAACTTAGAGCCTGGAAAAACCCCACCTCTGCCCCCACTCCTTTCATTTCTCTTAGATTCTCAATACCATAA 2370 0.473 MSHSGLWFVVFGGGGRRILQKNPTLFRYIACRKPFSGSSSDLQTFRQLPFSHAFFLSSITQRHTSSSCSSFLLRSPFCSPSRVLSSRTLWGSSPGFYSPVPMSKVLGFSGGDDFCPGGSIYANPKEASFFLPLGPQVDVYFPPRKRSRVNAPFVFDGEWFEQKQKTSIEALPDECLFEIFRRLPAGEERSACACVSKRWLMLLSSICKDEICAMKNTSAENIEKDGYDVEFGGEGYLSRNLEGKKATDVRLAAIAVGTASRGGLGKLSIRGSNICRGVTSLGLRAVAHGCPSLKSFSLWNVSTVGDEGLIEIANGCHQLEKLDLCKCPAVTDKALVAIAKNCQNLTELSLESCPNVGNEGLRAIGKFCPNLRSVTIKDCTGVSDQGIAGLFSTSLVLTKVKLQALSVSDLSLAVIGHYGKSVTDLVLNCLPNVSEKGFWVMGNGSGLQKLKSLTVASCRGVTDIGLEAVGKGCPNLKIAHLHKCAFLSDNGLISFAKAASSLESLRLEECHRITQFGFFGVLFNCGAKLKSISLVRCYGIKDMNLVLPTISPCESLRSLTICNCPGFGNASLSVLGKLCPKLQHVELSGLDGVTDAGVLPLLESSEAGLVKVNLSGCTNVTDKVVSSLANLHGWTLENLNLDGCKKISDASLMAIAENCALLCDLDVSKCSITDAGIAALAHAQQINLQILSLSGCALVSDRSLPALRKLGRTLLGLNIQHCNAINSGTVDMLVELLWRSSSSSSSSIIQLLGSLFPESATTRQEQQLRAWKNPTSAPTPFISLRFSIP 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02608 789 Pfam Leucine Rich repeat 665 681 IPR001611 GO:0005515
Vimu1g02608 789 Pfam Leucine Rich repeat 341 364 IPR001611 GO:0005515
Vimu1g02608 789 Pfam Leucine Rich repeat 579 601 IPR001611 GO:0005515
Vimu1g02608 789 CDD F-box_AtTIR1-like 168 205 - -
Vimu1g02608 789 Gene3D - 161 211 - -
Vimu1g02608 789 SUPERFAMILY RNI-like 409 741 - -
Vimu1g02608 789 PANTHER UNCHARACTERIZED 635 746 - -
Vimu1g02608 789 SMART LRR_CC_2 342 367 IPR006553 -
Vimu1g02608 789 SMART LRR_CC_2 316 341 IPR006553 -
Vimu1g02608 789 SMART LRR_CC_2 473 498 IPR006553 -
Vimu1g02608 789 SMART LRR_CC_2 553 578 IPR006553 -
Vimu1g02608 789 SMART LRR_CC_2 368 393 IPR006553 -
Vimu1g02608 789 SMART LRR_CC_2 685 710 IPR006553 -
Vimu1g02608 789 SMART LRR_CC_2 290 315 IPR006553 -
Vimu1g02608 789 SMART LRR_CC_2 659 683 IPR006553 -
Vimu1g02608 789 SMART LRR_CC_2 447 472 IPR006553 -
Vimu1g02608 789 SMART LRR_CC_2 579 604 IPR006553 -
Vimu1g02608 789 SMART LRR_CC_2 633 658 IPR006553 -
Vimu1g02608 789 SMART LRR_CC_2 606 631 IPR006553 -
Vimu1g02608 789 SMART LRR_CC_2 499 524 IPR006553 -
Vimu1g02608 789 Pfam F-box domain 171 208 IPR001810 GO:0005515
Vimu1g02608 789 SUPERFAMILY F-box domain 164 205 IPR036047 GO:0005515
Vimu1g02608 789 Gene3D Ribonuclease Inhibitor 237 355 IPR032675 -
Vimu1g02608 789 Gene3D Ribonuclease Inhibitor 356 544 IPR032675 -
Vimu1g02608 789 FunFam EIN3-binding F-box protein 1 547 742 - -
Vimu1g02608 789 Gene3D Ribonuclease Inhibitor 545 755 IPR032675 -
Vimu1g02608 789 FunFam EIN3-binding F-box protein 1 355 544 - -
Vimu1g02608 789 SMART fbox_2 171 212 IPR001810 GO:0005515
Vimu1g02608 789 FunFam EIN3-binding F-box protein 1 236 354 - -
Vimu1g02608 789 FunFam EIN3-binding F-box protein 1 161 210 - -
Vimu1g02608 789 SUPERFAMILY RNI-like 275 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02608 Vimu-Chr1 37659383 37663731 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02608 K14515 - gmx:100820247 1163.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02608 1 37659383 37663731 Vimu1g02608 1 37659383 37663731 ECH
Vimu1g02608 1 37659383 37663731 Vimu10g02960 10 40577530 40580735 PCT