Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu10g02960 | ATGCTTCTAAGCAGTATTTGTGAGAATGAAATCTGCAACAATGGAAGTACCCTAGATGATAATTTGGTTGGTGATGATGATGATGAAGGATTTAGCAACGAAGGATATCTATCCCGAAGCTTGGAGGGAAAGAAGGCAACAGATGTTAGACTTGCTGCCATTGCTGTTGGAACAGCCTCTCGAGGAGGGCTGGGGAAGCTTACAATCCGTGGATGCAATTCAGATCGTGGGGTGACTAATGTAGGTCTCAAGGCCATTGCTCATGGATGCCCTTCTCTGAAGGTTTTCTCTGTGTTTGATGTTGCTACTATTGATGATGAAGGCCTAATTGAGATTGCTAGCGGGTGTCATAAATTAGAGAAACTTGACCTTTGCAAGTGTCCCAATATTTCTGACAAGACTTTAATTGCAATCTCAAAGAAGTGTCCAAATCTGGCTGAGTTATCAATTGAGTCATGTCCCAACATTGGTAACGAAGGTCTACAAGCTATTGGGAAGTTGTGTTCCAATCTAAGGTCTGTATCAATCAAGGGATGCTCTGGAGTTGGCGACCAGGGAGTTTGTGGCCTCATGTCTTCAGCTTCTTATGTTCTATCAAAGGTGACGCTTGAGTCGTTGATGGTGTCTGATCTCTCTCTAGCAACGATTGGGCATTATGGCTTTCAAGTTACCAATCTTGTCCTAAGTGGCCTGCCAAATGTCAGTGAGAAAGGATTCTGGGTTATGGGTAATGGGCGTGGACTGCAGAAACTGAATTCAATCACAATCGAATGCTGCCAAGGTTTGACAGACACAGGGATCGAAGCTATTGGAAAGGGTTGTCCCAATGTGAAAAACTTCCAGCTTCGTAAATGTGCATATCTGTCAGACAAGGGGTTGGTATCATTTACCAGGGCTGCTCTATCAATTGAGAGCCTAAAATTGCACGAGTGCCACAGAATTACCCAAATTGGGCTTTTCGGTGTCTTTTTTCACTGTGCTGCCAAACTGAAGGTTCTTACTCTGATTAGCTGCTATGGGATCAAAGATCTGGACATGGATTTGCCAGCAATGTCTCCTTCTGAATCGTTTTGGTCCTTAACAATCCGTGACTGCCCTGGATTTGGGGACGCTAATCTTGCACTACTTGGAAAGCTGTGCCCTCGTCTTCAGCATGTTGAATTGAGTGGACTTCAGAGAGTAACAGACGAAGGGTTTCTTCCACTGCTGGAGTGTTCTGAGACCGGTCTGACAACAGTTAATTTAAGAGGGTGTCTAAATGTGACGGACAGAGTAGTTTTGTCTATTGTGAAGTCATATGGATGGACTCTTCAGGTGTTATGCCTTGATGGTTGTACAAGAGTCACCGATGCTAGCATGATGGCAATTGCAGGCAATTGCCCGGTGTTGTCTGATCTTGATGTTTCCAAATGTGCAATCACTGATACCGGTATTGCAGCTCTTGCACGCGGAAAACAGTTCAACCTGGAGATTCTTTCTTTGGCAGGTTGTATATCGGTTTCAGACAATAGCATGGCGGCATTTAAAAAATTGGGTCAATCCCTTGCAGGCTTGAATATCAAGCGTTGCAGTGCAATCAGCAGCCGGGGCGTCAGCAAGCTTCAGGAACATCTCTGGACGTGTGAAATCCTCAACTGA | 1638 | 0.4481 | MLLSSICENEICNNGSTLDDNLVGDDDDEGFSNEGYLSRSLEGKKATDVRLAAIAVGTASRGGLGKLTIRGCNSDRGVTNVGLKAIAHGCPSLKVFSVFDVATIDDEGLIEIASGCHKLEKLDLCKCPNISDKTLIAISKKCPNLAELSIESCPNIGNEGLQAIGKLCSNLRSVSIKGCSGVGDQGVCGLMSSASYVLSKVTLESLMVSDLSLATIGHYGFQVTNLVLSGLPNVSEKGFWVMGNGRGLQKLNSITIECCQGLTDTGIEAIGKGCPNVKNFQLRKCAYLSDKGLVSFTRAALSIESLKLHECHRITQIGLFGVFFHCAAKLKVLTLISCYGIKDLDMDLPAMSPSESFWSLTIRDCPGFGDANLALLGKLCPRLQHVELSGLQRVTDEGFLPLLECSETGLTTVNLRGCLNVTDRVVLSIVKSYGWTLQVLCLDGCTRVTDASMMAIAGNCPVLSDLDVSKCAITDTGIAALARGKQFNLEILSLAGCISVSDNSMAAFKKLGQSLAGLNIKRCSAISSRGVSKLQEHLWTCEILN | 545 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu10g02960 | 545 | Gene3D | Ribonuclease Inhibitor | 37 | 193 | IPR032675 | - | |
| Vimu10g02960 | 545 | FunFam | EIN3-binding F-box protein 1 | 36 | 154 | - | - | |
| Vimu10g02960 | 545 | Gene3D | Ribonuclease Inhibitor | 406 | 542 | IPR032675 | - | |
| Vimu10g02960 | 545 | FunFam | EIN3-binding F-box protein 1 | 406 | 543 | - | - | |
| Vimu10g02960 | 545 | SUPERFAMILY | RNI-like | 65 | 542 | - | - | |
| Vimu10g02960 | 545 | Gene3D | Ribonuclease Inhibitor | 277 | 348 | IPR032675 | - | |
| Vimu10g02960 | 545 | Gene3D | Ribonuclease Inhibitor | 194 | 276 | IPR032675 | - | |
| Vimu10g02960 | 545 | Gene3D | Ribonuclease Inhibitor | 349 | 405 | IPR032675 | - | |
| Vimu10g02960 | 545 | SMART | LRR_CC_2 | 116 | 141 | IPR006553 | - | |
| Vimu10g02960 | 545 | SMART | LRR_CC_2 | 142 | 167 | IPR006553 | - | |
| Vimu10g02960 | 545 | SMART | LRR_CC_2 | 300 | 325 | IPR006553 | - | |
| Vimu10g02960 | 545 | SMART | LRR_CC_2 | 274 | 299 | IPR006553 | - | |
| Vimu10g02960 | 545 | SMART | LRR_CC_2 | 486 | 511 | IPR006553 | - | |
| Vimu10g02960 | 545 | SMART | LRR_CC_2 | 512 | 537 | IPR006553 | - | |
| Vimu10g02960 | 545 | SMART | LRR_CC_2 | 434 | 459 | IPR006553 | - | |
| Vimu10g02960 | 545 | SMART | LRR_CC_2 | 407 | 432 | IPR006553 | - | |
| Vimu10g02960 | 545 | SMART | LRR_CC_2 | 90 | 115 | IPR006553 | - | |
| Vimu10g02960 | 545 | SMART | LRR_CC_2 | 380 | 405 | IPR006553 | - | |
| Vimu10g02960 | 545 | SMART | LRR_CC_2 | 460 | 484 | IPR006553 | - | |
| Vimu10g02960 | 545 | SMART | LRR_CC_2 | 168 | 193 | IPR006553 | - | |
| Vimu10g02960 | 545 | SMART | LRR_CC_2 | 248 | 273 | IPR006553 | - | |
| Vimu10g02960 | 545 | PANTHER | UNCHARACTERIZED | 330 | 533 | - | - | |
| Vimu10g02960 | 545 | FunFam | EIN3-binding F-box protein 1 | 155 | 345 | - | - | |
| Vimu10g02960 | 545 | Pfam | Leucine Rich repeat | 141 | 164 | IPR001611 | GO:0005515 | |
| Vimu10g02960 | 545 | Pfam | Leucine Rich repeat | 460 | 482 | IPR001611 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu10g02960 | Vimu-Chr10 | 40577530 | 40580735 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu10g02960 | K14515 | - | gmx:100805418 | 871.692 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vimu10g02960 | 10 | 40577530 | 40580735 | Vimu10g02960 | 10 | 40577530 | 40580735 | ECH | |
| Vimu1g02608 | 1 | 37659383 | 37663731 | Vimu10g02960 | 10 | 40577530 | 40580735 | PCT |