Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02595 ATGGGTGATAGAGGTATCAAGCTCTTCGATGAAGAAAGGAATGGTCTTTTCTCAATTTCCAATTTTGAGTCTCAATGGGGTGCGCGTGTTAACGACCCTGCGGCTATGTTTGCTAGCGTTAGTCAAGTGGGAATGGGGTTTGGCGTTCAAGAGCCAAACCCTTCTTCTGGTGATTCCCAGCACAATGGGGGCATGAACATTAGGATCCCTTGCACTGAGTTGTACGTTAGGTATGTTCAATCAGAGGGGAAGGTGAAGATTACTGGGGTTCCTGGGGAAGAAGAGGGGGTGGCGGGTGTTAAGGGGAAGAAAAAGGGTGTCTTTAAAGGGTTGAAGATCAAGGTGAAGAACCCTTCTCTTAGGAGGTTGATTAGTGGTGCCTTTGCTGGGGCAGTGTCACGGACCACTGTGGCACCCTTGGAGACCATTAGGACTCATTTGATGGTAGGAAGTAGTGGGAATTCTACTGGGGAGGTCTTCAGCAATATCATGAAGACTGATGGATGGAAGGGCTTGTTTAGGGGTAATTTTGTTAATGTGATTCGGGTTGCACCCAGCAAGGCCATTGAGCTATTTGCATATGATACTGTTAACAAGAACCTCTCACCAAAGCCAGGGGAGCAGCCTAAACTCCCTATTCCTCCATCATTGATAGCAGGTGCTTGTGCTGGAGTTAGTTCAACATTATGCACATATCCTCTGGAGTTGCTAAAGACTCGTTTGACTATCCAGAGGGGTGTGTATGATGGTCTACTAGATGCATTCCTGAAAATAGTGAGAGAAGAGGGTGCTGGAGAACTTTACAGAGGCCTGACACCCAGCCTTATTGGAGTAATACCATATTCTGCAACAAATTACTTTGCATATGACACATTGAGGAAAGCATACAGAAAAATTTTCAAAAAGGAGAAGATTGGGAATGTTGAAACCCTTTTGATAGGATCTGCAGCTGGTGCTATTTCAAGCAGTGCAACATTTCCTCTTGAAGTGGCACGCAAGCACATGCAAGTGGGAGCCCTGAGTGGAAGGCAAATATACAAAAATGTGATTCATGCCCTTGCAAGCATTCTTGAGCAAGAAGGGATTCAAGGATTGTACAAAGGATTGGGACCTAGCTGCATGAAGTTGGTGCCAGCTGCAGGAATTTCTTTCATGTGCTATGAAGCATGCAAGAGGATACTGGTAGAGGATGATGAAGAGGAGTAG 1206 0.4569 MGDRGIKLFDEERNGLFSISNFESQWGARVNDPAAMFASVSQVGMGFGVQEPNPSSGDSQHNGGMNIRIPCTELYVRYVQSEGKVKITGVPGEEEGVAGVKGKKKGVFKGLKIKVKNPSLRRLISGAFAGAVSRTTVAPLETIRTHLMVGSSGNSTGEVFSNIMKTDGWKGLFRGNFVNVIRVAPSKAIELFAYDTVNKNLSPKPGEQPKLPIPPSLIAGACAGVSSTLCTYPLELLKTRLTIQRGVYDGLLDAFLKIVREEGAGELYRGLTPSLIGVIPYSATNYFAYDTLRKAYRKIFKKEKIGNVETLLIGSAAGAISSSATFPLEVARKHMQVGALSGRQIYKNVIHALASILEQEGIQGLYKGLGPSCMKLVPAAGISFMCYEACKRILVEDDEEE 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02595 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 305 393 IPR018108 -
Vimu1g02595 401 Pfam Mitochondrial carrier protein 118 201 IPR018108 -
Vimu1g02595 401 Pfam Mitochondrial carrier protein 211 298 IPR018108 -
Vimu1g02595 401 Pfam Mitochondrial carrier protein 305 396 IPR018108 -
Vimu1g02595 401 Gene3D Mitochondrial carrier domain 113 399 IPR023395 -
Vimu1g02595 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 211 295 IPR018108 -
Vimu1g02595 401 PANTHER SOLUTE CARRIER FAMILY 25 113 394 - -
Vimu1g02595 401 PRINTS Mitochondrial carrier protein signature 226 244 IPR002067 GO:0055085
Vimu1g02595 401 PRINTS Mitochondrial carrier protein signature 268 286 IPR002067 GO:0055085
Vimu1g02595 401 PRINTS Mitochondrial carrier protein signature 122 135 IPR002067 GO:0055085
Vimu1g02595 401 PRINTS Mitochondrial carrier protein signature 175 195 IPR002067 GO:0055085
Vimu1g02595 401 PRINTS Mitochondrial carrier protein signature 314 336 IPR002067 GO:0055085
Vimu1g02595 401 PRINTS Mitochondrial carrier protein signature 135 149 IPR002067 GO:0055085
Vimu1g02595 401 SUPERFAMILY Mitochondrial carrier 118 389 IPR023395 -
Vimu1g02595 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 117 200 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02595 Vimu-Chr1 37472736 37475436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02595 1 400 Organic Solute Cotransporters AT4G32400 63.391 1.14e-179 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02595 K14684 - gmx:100816041 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02595 1 37472736 37475436 Vimu1g02595 1 37472736 37475436 ECH
Vimu1g02595 1 37472736 37475436 Vimu10g02945 10 40449946 40453049 PCT