Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02945 ATGGACCCCTACCAGAAAGAAAAAAGTAATCTTTGTAACAAATCACAAGTTACAAGGCCTTTGCCGTTGATGGGTAGGAGGAGAGTCAAACTGTTTGATGAGAAAAGTGATGGGTTTTTCTCTGTCAGCTGCTTGGGGTTTCAATCTGAAGATAGGTGCTATCAATTCGGAGGCTTGTTTGCCAGTATTAGTCAGATGGGAGTGGGGGTTGGTGTGCAACCGAGTGATCCTTCTGATTCGCGCGACAATGGTGACACGAAACTTCCCTTCAATGAACTCTTCATCAAGTACCAGGGAAAAGATGAGGTTGTTGAAGAAAGGCTTGATGGCAAGAAGAGAAAGGGTGGTATTTCACTGAGGCTTAAGATAAAAAACCCTTCACTGAGAAGGTTGTTTAGTGGGGCAATAGCTGGGGCTGTGTCTCGGACTGCTGTGGCACCTTTGGAGACTATAAGAACTCTTATGATGGTGGGGAATAGTGACCATTCCACAACTGAGATGTTCCATAATATCGTGAAAACTGATGGCTGGAAGGGCTTGTTTAGGGGTAATTTTGTTAATGTCATTCGGGTTGCGCCTAGCAAGGCCATTGAGCTATTTACTTTCGATACAGTGAACAAGAACTTATCCCCAAAGCCTGGGGAAGAGTCCAAATTCCCAATTCCTGCATCATTGATTGCAGGTGCCTGTGCTGGAGTGACTTCAACTATATGTACCTATCCTCTTGAATTAGTCAAGACTCGACTAACTGTCCAGAGAGATGTTTATGATGGTCTGCTTCATGCATTCTTGAAAATAATCCGAGAAGAGGGTCCTGCAGAACTTTACAGTGGTCTTACAGCTAGTCTTATAGGAGTTGTGCCCTATGCTGCAGCCAATTACTATGCCTATGACACTCTAAAGAAAGCATACAAGAAAGTTTTTAAACAAGAGAAGGTGGGGAATATTGAGACCCTTTTGATCGGTTCTGTAGCTGGTGCTATTTCAAGTAGTTCAACTTTTCCAATGGAGGTAGCTCGCAAGCAAATGCAGCTTGGTACCCTCAGTGGAAGACAGGTTTACAAGAATGTGTTTCATGCCCTTGCATGCATACTAGAACAAGAAGGGATCCATGGTTTATACAGAGGGTTGGTACCAAGTTGCATGAAGTTGATACCGGCAGCTGGAATCTCTTTCATGTGCTACGAAGCATGCAAGAGGATCTTTCTAGAGGACGATGAGGAGGATTAG 1230 0.4398 MDPYQKEKSNLCNKSQVTRPLPLMGRRRVKLFDEKSDGFFSVSCLGFQSEDRCYQFGGLFASISQMGVGVGVQPSDPSDSRDNGDTKLPFNELFIKYQGKDEVVEERLDGKKRKGGISLRLKIKNPSLRRLFSGAIAGAVSRTAVAPLETIRTLMMVGNSDHSTTEMFHNIVKTDGWKGLFRGNFVNVIRVAPSKAIELFTFDTVNKNLSPKPGEESKFPIPASLIAGACAGVTSTICTYPLELVKTRLTVQRDVYDGLLHAFLKIIREEGPAELYSGLTASLIGVVPYAAANYYAYDTLKKAYKKVFKQEKVGNIETLLIGSVAGAISSSSTFPMEVARKQMQLGTLSGRQVYKNVFHALACILEQEGIHGLYRGLVPSCMKLIPAAGISFMCYEACKRIFLEDDEED 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02945 409 Gene3D Mitochondrial carrier domain 122 407 IPR023395 -
Vimu10g02945 409 ProSiteProfiles Solute carrier (Solcar) repeat profile. 313 401 IPR018108 -
Vimu10g02945 409 ProSiteProfiles Solute carrier (Solcar) repeat profile. 219 303 IPR018108 -
Vimu10g02945 409 PRINTS Mitochondrial carrier protein signature 183 203 IPR002067 GO:0055085
Vimu10g02945 409 PRINTS Mitochondrial carrier protein signature 276 294 IPR002067 GO:0055085
Vimu10g02945 409 PRINTS Mitochondrial carrier protein signature 143 157 IPR002067 GO:0055085
Vimu10g02945 409 PRINTS Mitochondrial carrier protein signature 234 252 IPR002067 GO:0055085
Vimu10g02945 409 PRINTS Mitochondrial carrier protein signature 130 143 IPR002067 GO:0055085
Vimu10g02945 409 PRINTS Mitochondrial carrier protein signature 322 344 IPR002067 GO:0055085
Vimu10g02945 409 SUPERFAMILY Mitochondrial carrier 126 397 IPR023395 -
Vimu10g02945 409 PANTHER SOLUTE CARRIER FAMILY 25 125 402 - -
Vimu10g02945 409 ProSiteProfiles Solute carrier (Solcar) repeat profile. 125 208 IPR018108 -
Vimu10g02945 409 Pfam Mitochondrial carrier protein 313 404 IPR018108 -
Vimu10g02945 409 Pfam Mitochondrial carrier protein 126 209 IPR018108 -
Vimu10g02945 409 Pfam Mitochondrial carrier protein 220 306 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02945 Vimu-Chr10 40449946 40453049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02945 24 408 Organic Solute Cotransporters AT4G32400 62.755 1.38e-172 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02945 K14684 - gmx:100810035 636.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02945 10 40449946 40453049 Vimu10g02945 10 40449946 40453049 ECH
Vimu1g02595 1 37472736 37475436 Vimu10g02945 10 40449946 40453049 PCT