Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02562 ATGGGTTCTTGCAAACCCCAACAAGAACATGTTCATGGACCTATCATCATAGGTGCCGGTCCTTCAGGCCTAGCCGTGGCTGCGTGTCTCTCGGAGCACAAAGTCCCTTTCGTGATTCTTGAGAGAAGCAACTGCATAGCTTCTCTTTGGCAACACAAAACCTACGACCGTCTCAAACTCCACCTCCCAAAGCAGTTCTGCGAGCTTCCCTTGAAAGGTTTTCCCCACAACTTCCCCAAGTACCCCACAAAGTACCAGTTCATATCCTACATGGAGTCCTACGCCTCACACTTCAACATCCACCCCAGGTTCAACCAAACAGTGGAAACTGCTCACTTTGATAAAGGGTCTCAGCTTTGGCTGGTTAAGACTCAGCACTGTGAGCTTCTCTCTCCTTGGCTCGTGGTAGCCACTGGGGAGAATGCTGAGCCTGTGCTTCCTAGAATTCATGGCATGGACCATTTTTCTGGCTCCATTGCTCACACCAGTGTCTACAAGTCTGGCTCTGAGTACAAAAACCAGAAGGTTCTGGTCATTGGCTGTGGCAATTCAGGAATGGAAGTTAGCTTAGACCTTTGCAGACACAATGCCTCCCCTTACATGGTTGCAAGGAACACAGTGCATGTGCTTCCTAGGGAGATGTTTGGCTTCTCAACTTTTGGCATAGCCATGGCTCTTTACAAGTGGTTTCCCATCAAAGTTGTAGACAAAATTCTCTTACTTGTCACCAACTTCATGTTGGGAAACACCAATCACTATGGCATCAAAAGGCCCAAAACAGGCCCAATAGAGCTGAAACTAGCCACAGGGAAAACCCCAGTCCTTGATGTGGGTCAAGTTGCACAGATCAAATGTGGCAACATAAAGGTAATGGAAGGTGTGAAGGAGATAACAAGAAAAGGTGCGAAATTTATGGATGGACAAGAAAAGGAATTTGATGCTATAATCTTGGCAACAGGGTACAAGAGCAACGTGCCTACTTGGCTTAAGGTTAGAATTTTATCTGTTGTGTTGTGGTATGCATGCATATTCTTAAAAGTTATTATGCAAGATTCTATTTTAATTATGGGTTGTGATTTTTTCACTGAAGATGGAATGCCGAAAACACCCTTTCCCCATGGGTGGAAAGGGGAGCAGGGATTGTATACGGTGGGGTTCACCAGAAGAGGCATTCAAGGAACATCGTGTGATGCAATCAAGATCGCTGAAGACATAGCCTCACAGTGGAGAACCGTAGAGAACAAGAATCAATGCAATTCACATATCATCCTTCTCACTTCATAA 1284 0.4556 MGSCKPQQEHVHGPIIIGAGPSGLAVAACLSEHKVPFVILERSNCIASLWQHKTYDRLKLHLPKQFCELPLKGFPHNFPKYPTKYQFISYMESYASHFNIHPRFNQTVETAHFDKGSQLWLVKTQHCELLSPWLVVATGENAEPVLPRIHGMDHFSGSIAHTSVYKSGSEYKNQKVLVIGCGNSGMEVSLDLCRHNASPYMVARNTVHVLPREMFGFSTFGIAMALYKWFPIKVVDKILLLVTNFMLGNTNHYGIKRPKTGPIELKLATGKTPVLDVGQVAQIKCGNIKVMEGVKEITRKGAKFMDGQEKEFDAIILATGYKSNVPTWLKVRILSVVLWYACIFLKVIMQDSILIMGCDFFTEDGMPKTPFPHGWKGEQGLYTVGFTRRGIQGTSCDAIKIAEDIASQWRTVENKNQCNSHIILLTS 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02562 427 Pfam Pyridine nucleotide-disulphide oxidoreductase 15 206 - -
Vimu1g02562 427 Gene3D - 5 336 IPR036188 -
Vimu1g02562 427 FunFam Flavin-containing monooxygenase 14 336 - -
Vimu1g02562 427 SUPERFAMILY FAD/NAD(P)-binding domain 15 208 IPR036188 -
Vimu1g02562 427 PRINTS Pyridine nucleotide disulphide reductase class-II signature 171 195 - -
Vimu1g02562 427 PRINTS Pyridine nucleotide disulphide reductase class-II signature 132 140 - -
Vimu1g02562 427 PRINTS Pyridine nucleotide disulphide reductase class-II signature 13 35 - -
Vimu1g02562 427 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Vimu1g02562 427 SUPERFAMILY FAD/NAD(P)-binding domain 174 409 IPR036188 -
Vimu1g02562 427 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 15 411 - -
Vimu1g02562 427 PRINTS FAD-dependent pyridine nucleotide reductase signature 175 193 - -
Vimu1g02562 427 PRINTS FAD-dependent pyridine nucleotide reductase signature 14 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02562 Vimu-Chr1 37058561 37060798 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02562 K11816 - gmx:100798781 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02562 1 37058561 37060798 Vimu10g02915 10 40231194 40233659 PCT