Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02547 ATGCTCAAGCAAATCCTCAGCAAGCTTCCTCGGAAGTCTTTGAAACCCGACTCGGACGAGTCGTCTTGGGGTGACTCCGGGCTTTCATCCGATTCGCCACGCGTTGCCGGTAAAAGCCAAAGACCACATGGCGGCAGTTCCACCGCTGCGAAGCGAGCTTCGTCATCGGCGGTGTTTCCGGCGAGCATGGTGTCCGGATTTGAACCTTTGGTGCCGTTTAAGGATGTTGCTAATGCTGAGAAGATGAACCTGTTCGTGAGCAAGTTGAGCCTTTGTTGTGTAATGTTTGATTTCAGTGACCCTAGTAAGAGCGTTGCAGATAAAGATGTGAAAAGAAAGACTTTGGTTGAGCTTGTTGATTTTGTGGCTTGTGGGACAATGAAGTTTAGTGAGCCTGCTATCCTTGCTTTGTGTAGAATGTGTGCTTTCAATTTGTTTAGAGTTTTCCCTCCTAATTATAGGACAGGTGGTGGTGAGAATGATGATGATGAACCTATGTTTGATCCTTCTTGGCCGCATTTGCAACTTGTGTATGAATTGCTGCTCAAGTTTATCTCTTCTTCGTGCCTCGATGCGAAGGTGGCGAAAAAGTATATTGATCATTCGTTTATTGCCAGACTGCTCGAGTTGTTTGATTCGGAGGATCCTAGGGAAAGGGATTGCTTGAAGGCAATTCTGCATAGGATTTATGGGAAGTTCATGGTGCATAGACCCTATATTCGGAAATCTATTAACAACATATTTTATCGGTTTGTGTTTGAGACTGAGAAGCACAGTGGGATTGGTGAGTTATTGGAAATTTTTGGGAGTGTGATTACTGGGTTTGCTTTACCCTTGAAAGAGGAACATAAAATCTTCTTATGGAGGGTTTTGGTCCCCTTGCACAAGCCGAAATCAATTGGGGTCTACTTTCAACAATTGTCCTACTGCGTTATGCAGTTTATAGAAAAGGAGCCCAAGTTAGCAAGCATTGTCATAAGGGGTTTGTTGAAATATTGGCCAGCAACAAATAGTCAGAAAGAGGTGATCTTTCTGGGTGAACTGGAAGAAATTTTGGAGGTGATTAACATGGTAGAGTTCCAGAGGATCATGGTTCCTTTGTTTTGGCGGATTGGATGCTGCATAAACAGCTTACACTTCCAGGTAGCTGAAAGGGCCCTTTTCTTATGGAACAATGATCACATTGTGAACTTGATTGCACATAACCGGCAAGTGATCCTGCCCATCATCTTTCCAGCTTTAGATAGGAGTGTTCAAGGCCATTGGAACCCGGCAGTTGTCAACCTAACTCACAATATTAGAAAGATGTTCTTGGAGATGGATGAAAAGCTCTTCATTTATTGTCATAATCACTTTAAGGAGGAAGAAACAATCTTGACCTCTGCAGCAGAGAAGCGGAAGGAGGCATGGAAACAACTAGAGCATGCTGCCAGTCTCAGGCCTGTTACTGGAAATACTGCAGTGTTAGTGTCCTGA 1476 0.4404 MLKQILSKLPRKSLKPDSDESSWGDSGLSSDSPRVAGKSQRPHGGSSTAAKRASSSAVFPASMVSGFEPLVPFKDVANAEKMNLFVSKLSLCCVMFDFSDPSKSVADKDVKRKTLVELVDFVACGTMKFSEPAILALCRMCAFNLFRVFPPNYRTGGGENDDDEPMFDPSWPHLQLVYELLLKFISSSCLDAKVAKKYIDHSFIARLLELFDSEDPRERDCLKAILHRIYGKFMVHRPYIRKSINNIFYRFVFETEKHSGIGELLEIFGSVITGFALPLKEEHKIFLWRVLVPLHKPKSIGVYFQQLSYCVMQFIEKEPKLASIVIRGLLKYWPATNSQKEVIFLGELEEILEVINMVEFQRIMVPLFWRIGCCINSLHFQVAERALFLWNNDHIVNLIAHNRQVILPIIFPALDRSVQGHWNPAVVNLTHNIRKMFLEMDEKLFIYCHNHFKEEETILTSAAEKRKEAWKQLEHAASLRPVTGNTAVLVS 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02547 491 Gene3D - 78 476 IPR011989 -
Vimu1g02547 491 PIRSF PP2A_B56 8 489 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vimu1g02547 491 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 478 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vimu1g02547 491 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 72 477 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vimu1g02547 491 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 77 476 - -
Vimu1g02547 491 SUPERFAMILY ARM repeat 83 473 IPR016024 -
Vimu1g02547 491 MobiDBLite consensus disorder prediction 1 51 - -
Vimu1g02547 491 MobiDBLite consensus disorder prediction 20 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02547 Vimu-Chr1 36877446 36880061 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02547 K11584 - gmx:100781390 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02547 1 36877446 36880061 Vimu10g02887 10 40040393 40042684 PCT