Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02887 ATGCTGAAGCAATTCCTCAGCAGACTCCCCCGCAAGACACCAAAATCCGACTCGGACGAGTCATACCGAGCCGACTCGTCACGCTCGGACGATTCCCCACGCGCCGCCGGCAGACACAATCGCACGCACGGCGTCGCTGCCGCTTCGAACGCTGCGAAACGGACATCCTCGTCCGCGGTTTTCCCAGCAAGCACGGTGTCGGTGATAGAACCTCTGGTGCCTTTCAAGGATGTCCCGAACTCGGAAAAGATGAACCTTTTCGTGAGCAAGCTGAGTCTGTGTTGCGTGTCCTTCGATTTCACGGACCCTGGTAAGGATACGGTGGAGAAAGAGGTGAAGAGAAGAACCCTTGTTGAACTTGTTGATTTTGTTTCCTCTTGTGGGTCCACGAGGTTCGGTGAACCTGCTATTCTTGCTGTGTGTAGAATGTGTGCTATTAATCTCTTTCGCGTTTTCCCGCCAAATTATAGGTCCAATCGTGGTGGTGAGAATGATGATGATGAGCCATCCTTTGATCCCGCCTGGCCTCATTTGCAGCTTGTGTATGAGTTGCTGCTCAAGTTTATAACCTCTAGCTGTCTTGATGCTAAGGTGGCCAAAAAGTACATCGACCATTCTTTTATCTTGAGGTTGTTGGAGTTGTTTGATTCGGAAGATCCTAGGGAGAGGGACTGCTTGAAGACCATTATGCATAGGGTTTATGGCAAGTTCATGGTGCATAGACCCTACATAAGGAAATCCATTAACAACGTGTTTTTTAAGTTTGTGTTTGAGACTGAGAGGCACAACGGGATTGCTGAGTTGTTGGAGATTTTTGGCAGCATAATTAGTGGGTTCGCCTTGCCTTTGAAGGAGGAGCATAAGATCTTCTTGTGGAGGGTTTTGATCCCCTTGCACAAGCCCAAATCTATGGGGGTGTACTTCCAGCAGTTGTCTTACTGCGTCACACAGTTCGTCGAGAAGGAGCCTAAGTTGGCGAGCATTGTCATCAGGGGGTTGTTGAAGTATTGGCCGATAACGAATAGTCAGAAAGAGGTGATGTTCCTGGGTGAACTGGAAGAAATTTTGGAAACAATTAACATGGTAGAGTTCCAGAGGGTCATGGTACCGTTGTTTTGGCGGATGGGATGCTGCATTAACAGTATGCACTTTCAGGTAGCTGAAAGAGCCCTTTTCTTATGGAACAATGATCATATTGTCAATTTGATTGCTCACAACCGACAAGTGATCCTGCCAATCATGTTTCCAGCCTTAGAGAAGAATTCTCAAGGCCACTGGAGCCAAGCAGTGCTCAACCTAACTCATAATGTTAGAAAAATGTTTGCAGAGATGGATGAGAAGCTATTCCTGGCATGTCATTCTCAGTTTAAGGAAGAAGAAGCAATGCTAAACGCAGCGGCAGAGAAGCGGAAGGAAGCATGGAAACAACTAGAACATGCAGCCAGTCTCCAGCCTGTGATTGGAAATACCGCAGTTTTAGTGTCTCCAATTTGA 1494 0.4739 MLKQFLSRLPRKTPKSDSDESYRADSSRSDDSPRAAGRHNRTHGVAAASNAAKRTSSSAVFPASTVSVIEPLVPFKDVPNSEKMNLFVSKLSLCCVSFDFTDPGKDTVEKEVKRRTLVELVDFVSSCGSTRFGEPAILAVCRMCAINLFRVFPPNYRSNRGGENDDDEPSFDPAWPHLQLVYELLLKFITSSCLDAKVAKKYIDHSFILRLLELFDSEDPRERDCLKTIMHRVYGKFMVHRPYIRKSINNVFFKFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLWRVLIPLHKPKSMGVYFQQLSYCVTQFVEKEPKLASIVIRGLLKYWPITNSQKEVMFLGELEEILETINMVEFQRVMVPLFWRMGCCINSMHFQVAERALFLWNNDHIVNLIAHNRQVILPIMFPALEKNSQGHWSQAVLNLTHNVRKMFAEMDEKLFLACHSQFKEEEAMLNAAAEKRKEAWKQLEHAASLQPVIGNTAVLVSPI 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02887 497 MobiDBLite consensus disorder prediction 10 38 - -
Vimu10g02887 497 Gene3D - 79 480 IPR011989 -
Vimu10g02887 497 SUPERFAMILY ARM repeat 85 477 IPR016024 -
Vimu10g02887 497 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 74 481 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vimu10g02887 497 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 482 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vimu10g02887 497 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 79 480 - -
Vimu10g02887 497 PIRSF PP2A_B56 4 494 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vimu10g02887 497 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02887 Vimu-Chr10 40040393 40042684 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02887 K11584 - gmx:100808283 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02887 10 40040393 40042684 Vimu10g02887 10 40040393 40042684 ECH
Vimu1g02547 1 36877446 36880061 Vimu10g02887 10 40040393 40042684 PCT