Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02526 ATGGGGTGTGGAAGGTTTAGGGGGTGCCTTGTTCTTGTGTTATGTGTTGTATTATTGGTGGGTCTAGTGAGTGGGATTGGTGTTAATTGGGGCACACAATTAACCCACCCTTTGCCATCTTCCACTGTGGTGAAAATGCTGAAGGACAATGGTATTCAGAAAGTTAAGCTTTTTGATGCTGATCCTGATATTTTAAATGCTCTAAAGAAGTCTGGAATTCAGGTGATGGTTGGTATACCAAATGACATGCTCTACACATTGGCCAACAGCATGCAAGCGGCTGAAAAATGGGTTTCCAAGAATGTTTCAGCATTTGTCTCATCTGCGGGTGTGGACATCAGGTATGTTGCAGTGGGAAATGAACCTTTCTTGTCAACTTACAATGGTTCATTTGAAACCACAACACTTCCAGCTCTTCAAAACATCCAAGCAGCTCTAGTGAAAGCTAGTTTAGGAAACCAGGTTAAAGTCACAGTGCCTCTAAATGCTGATGTCTATCAGAGTGCACAAGTACCCTCTGATGGTGACTTCAGGCAAGACATCCATGATCTCATGGTGCAGATTGTCAAGTTCTTGAGCCAGAACAATGCCCCATTTACAGTGAACATCTATCCTTTCATCAGCCTCTATGAAGACCCCAATTTTCCTGTTGATTATGCCTTCTTCAATGGCTTTCAATCCCCCATAAATGACAATGGAAGGATCTATGACAATGTCTTTGATGCCAATCATGATACTCTAGTATGGGCCCTGCAAAAAAATGGTTTTGGAAACATGCCTATAATTGTAGGAGAAGTAGGGTGGCCTACAGATGGAGACAGAAATGCAAACCTTCAATATGCGCAACGGTTTAACCAGGGCTTCATGTCACGCTACATGGCCGGAAAGGGGACACCGATGAGGCCTGGTCCTATGGATGCTTACTTGTTCAGTCTCATAGATGAAGATGGCAAAAGCATTCAGCCTGGTAATTTTGAAAGACATTGGGGTTTGTTTTACTATGATGGACAACCCAAGTACCAGCTTAACATAGGATCAAGAACCAATGGCTTGGTTGGTGCAACTGGGGTAGCATATCTGGCCAAAAAGTGGTGCATTTTGAAACCCTCAGCAAACCTCAATGATGACCAAGTGGCACCTAGTGTGTCTTTTGCTTGTCAGAATGCAGATTGTACAAGTCTTGGATATCAAACTTCATGTGGTAGTTTAGATACTCGTGGTAACATTTCTTATGCATTCAATAGCTATTACCAAGTGAATGATCAGATTGACAGTGCATGCAAATTCCCTGGCCTTTCTGTTGTCACTGACAGAGATCCTTCAACTGGAGATTGCAAATTCAAGATCATGATCCAGACAGATTCTGCTGGCATGCATGGGAATGGGAGAATTTGGCATCTCAGAATGCAACAATGGGAAAACAACTTCAAATTTGGGTCATATGCACCTTAA 1452 0.427 MGCGRFRGCLVLVLCVVLLVGLVSGIGVNWGTQLTHPLPSSTVVKMLKDNGIQKVKLFDADPDILNALKKSGIQVMVGIPNDMLYTLANSMQAAEKWVSKNVSAFVSSAGVDIRYVAVGNEPFLSTYNGSFETTTLPALQNIQAALVKASLGNQVKVTVPLNADVYQSAQVPSDGDFRQDIHDLMVQIVKFLSQNNAPFTVNIYPFISLYEDPNFPVDYAFFNGFQSPINDNGRIYDNVFDANHDTLVWALQKNGFGNMPIIVGEVGWPTDGDRNANLQYAQRFNQGFMSRYMAGKGTPMRPGPMDAYLFSLIDEDGKSIQPGNFERHWGLFYYDGQPKYQLNIGSRTNGLVGATGVAYLAKKWCILKPSANLNDDQVAPSVSFACQNADCTSLGYQTSCGSLDTRGNISYAFNSYYQVNDQIDSACKFPGLSVVTDRDPSTGDCKFKIMIQTDSAGMHGNGRIWHLRMQQWENNFKFGSYAP 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02526 483 Gene3D Glycosidases 25 350 - -
Vimu1g02526 483 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 17 436 IPR044965 GO:0004553|GO:0005975
Vimu1g02526 483 Pfam X8 domain 363 432 IPR012946 -
Vimu1g02526 483 Gene3D - 359 458 - -
Vimu1g02526 483 SMART X8_cls 363 447 IPR012946 -
Vimu1g02526 483 FunFam Glucan endo-1,3-beta-glucosidase 5 25 350 - -
Vimu1g02526 483 Pfam Glycosyl hydrolases family 17 26 343 IPR000490 GO:0004553|GO:0005975
Vimu1g02526 483 ProSitePatterns Glycosyl hydrolases family 17 signature. 259 272 IPR000490 GO:0004553|GO:0005975
Vimu1g02526 483 SUPERFAMILY (Trans)glycosidases 26 343 IPR017853 -
Vimu1g02526 483 FunFam Glucan endo-1,3-beta-glucosidase 8 359 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02526 Vimu-Chr1 36620799 36623710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02526 4 456 Glycoside Hydrolase AT4G31140 72.026 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02526 K19893 - gmx:100775918 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02853 10 39816321 39822208 Vimu1g02526 1 36620799 36623710 PCT