Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02853 ATGTTAAGTTCACTGGGCATCACAAGACTCCCGAATGAAGAAAGATTTTCGTTTGTTGGTGATTTTGGATTAATGGGGGGTGGAAACTTTGGAAGGTGTGATTTTGTTGTTGTTGGGGTGTTGGTGGTGTTGGTGGGGTCAGTGAGTGGGATTGGTGTGAACTGGGGGACACAGTCGACACACCCTTTGTCTCCTTCGAAGGTGGTGAAGATGCTGAAGGACAATGGCATTCAGAAGGTGAAGCTTTTTGATGCTGATCCTGGTATTTTGGATGCTCTCAAGAAGTCTGGGATACAGGTCATGGTGGGGATTCCCAATGACATGCTTTATACGCTCGCTAACAGTGTTGAAGCAGCTGAAAAATGGGTTTCCAAGAATGTTTCCAAACATGTCTCTTCTGGAGGAGTTGACATCAGGTATGTTGCAGTGGGGAATGAACCATTCTTGTCAACATACAATAGAACTTATGAAACCACAACTCTTCCAGCACTTCAAAACATTCAAGCAGCTCTCACAAAGTCCGGTTTGAGCAACCGTGTGAAGGTCACAGTCCCCTTAAATGCCGATGTGTACCAAAGCTCGTCAGAGAAGCCGTCAGACGGCGGTTTCAGACCAGACATTAACAATCTGATGCTACAGATTGTGAAGTTCTTGAATGACAATGGCGCACCTTTCACAGTGAACATCTACCCTTTCATCAGCCTCTACGCTGACCCCAATTTCCCTGTTGATTATGCTTTCTTTAATGGCTACCAGCCTGCTATAAATGACAATGGAAGAAACTACGACAATGTGTTTGATGCTAACCACGACACTTTGGTGTGGGCACTGCAGAAAAATGGCTTCGGAAACTTGCCTATAATTGTAGGGGAAATTGGGTGGCCTACAGATGGAGACAGAAATGCAAACCTTCAGAGTGCACAACGTTTCAACCAAGGTTTCATGTCACGTTACATGTCTGGAAAAGGGACCCCGATGAGGCCTAGTCCTATAGATGCTTATTTGTTCAGTCTGATAGATGAAGATGCGAAAAGCATTCAGCCAGGGAACTTTGAGCGTCATTGGGGGATGTTTTACTTGGATGGACAACCAAAATACCAACTTAATCTTGGGTCTGCAAGAGGTAATGGGTTAGTGGGTGCTGAAGGGGTTGATCACTTGGCTAAAAAGTGGTGCGTTTTGAAACCTTCAGCGAACCTTAACGATGATCAAGTGGCACCTAGTGTGGCCTATGCTTGTCAAAATGCTGATTGCACTAGTCTTGGGTATGGAACTTCTTGTGGCAATTTGGATGTGCATGGTAACATTTCTTATGCGTTTAACAGTTACTATCAGGTCAATGACCAGATGGACAGTGCCTGCAAATTCCCTGGCCTTTCTATGGTCACTGACAAAGATCCTTCTGTTGGAGATTGCAAGTTCAGAATCATGATCCAGACAGATTCTGCTGTGCAACATGGAAAAGTTGGATCTCTATCCATAGTGCTGTGTTCTTTTGTAATTTTCCTATGTTGTAATCTTTTGTTTTGA 1530 0.4425 MLSSLGITRLPNEERFSFVGDFGLMGGGNFGRCDFVVVGVLVVLVGSVSGIGVNWGTQSTHPLSPSKVVKMLKDNGIQKVKLFDADPGILDALKKSGIQVMVGIPNDMLYTLANSVEAAEKWVSKNVSKHVSSGGVDIRYVAVGNEPFLSTYNRTYETTTLPALQNIQAALTKSGLSNRVKVTVPLNADVYQSSSEKPSDGGFRPDINNLMLQIVKFLNDNGAPFTVNIYPFISLYADPNFPVDYAFFNGYQPAINDNGRNYDNVFDANHDTLVWALQKNGFGNLPIIVGEIGWPTDGDRNANLQSAQRFNQGFMSRYMSGKGTPMRPSPIDAYLFSLIDEDAKSIQPGNFERHWGMFYLDGQPKYQLNLGSARGNGLVGAEGVDHLAKKWCVLKPSANLNDDQVAPSVAYACQNADCTSLGYGTSCGNLDVHGNISYAFNSYYQVNDQMDSACKFPGLSMVTDKDPSVGDCKFRIMIQTDSAVQHGKVGSLSIVLCSFVIFLCCNLLF 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02853 509 Gene3D Glycosidases 50 376 - -
Vimu10g02853 509 FunFam Glucan endo-1,3-beta-glucosidase 5 50 376 - -
Vimu10g02853 509 SMART X8_cls 390 474 IPR012946 -
Vimu10g02853 509 Pfam Glycosyl hydrolases family 17 51 369 IPR000490 GO:0004553|GO:0005975
Vimu10g02853 509 SUPERFAMILY (Trans)glycosidases 51 369 IPR017853 -
Vimu10g02853 509 FunFam Glucan endo-1,3-beta-glucosidase 8 386 483 - -
Vimu10g02853 509 ProSitePatterns Glycosyl hydrolases family 17 signature. 285 298 IPR000490 GO:0004553|GO:0005975
Vimu10g02853 509 Gene3D - 386 487 - -
Vimu10g02853 509 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 43 463 IPR044965 GO:0004553|GO:0005975
Vimu10g02853 509 Pfam X8 domain 390 460 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02853 Vimu-Chr10 39816321 39822208 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02853 35 505 Glycoside Hydrolase AT4G31140 68.153 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02853 K19893 - gmx:100796552 917.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02853 10 39816321 39822208 Vimu1g02526 1 36620799 36623710 PCT