Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02514 GAAATTAGTTGCTGCAGTCCTTTTTTCAGGGCTAGGCTTTTTTGTTGTACAATGACTAGACCAACAATTCGAAATAAAAATAAAAGGCAGAAACATGGGGATGATGATGACATTTCTGAAATATGGAGGAAAATTCATAAAACAGGAGCAGTGACTGAAGACGATATGAGCCAACTATATATGATTTGGAAACCAGTCTGTTCAGGCTGCCGTGTTAATACTAAAGACAACCCAAATTGCTTCTGTGCCTTGATTCCTCCTCCAAATGGTACCCGGAAGTCTGGTTTATGGCAGAAGATGTCTGACTTTCTTGGAAGTCTTGGCCCTGATCCGACAATAGATCTTCGTGCTTCTGATTGTTCACCTGCTGGTCTGACAAATCTTGGTGCAACATGTTATGCCAACAGTATACTACAGTGCTTGTACATGAATAAATATTTTCGACAAGGCATATTTTCTGTAGAACCCGATCTTTTACAGCAACAACCAGTGTTAGATCAACTGACTCGACTTTTTGTACAATTGTATGCTAGTAAAAAGGCTTTCGTAGATTCTTCCCCATTTGTTAAAACACTGGAGTTAGACAATGAAGTTCAGCAGGATAGCCATGAATTCCTGACATTGCTTTTATCATTACTTGAGTGTTGTTTGAGCCATTCCAAAATTGCTAAAGCAAGAACAATTGTTCAAGATCTTTTCCGAGGGAGCGTGTCTCATGTGACAACGTGTTCGCAATGTGGAAGAGAATCTGAAGCTTCTTACAAAATGGAAGACTTCTATGGGATAGAGTTGAATATCAAGGGATTGAAATGTTTAGATGAGAGCTTAGATGATTACCTTGCCATTGAAGAGCTCCATGGAGATAATCAATATTTTTGTGGGTCATGTAAAACAAGAGTTGATGCTACTCGCAGCATCAAGCTGTGTACATTACCTAATGTACTTAATTTTCAACTTAAACGTTATGTCTTCCTTCCACAGAATACAATGAAGAAGAAAGTTACTTCTGCATTTTCATTTCCAGCTAAACTTGATATGTGTGATAGATTGTCTGAGCCATCTCAAAATGAATTGATATATGACTTGTCAGCTGTACTGATTCACAAAGGCACTGCTGTTAATAGTGGTCATTACATTGCCCATATTAAGGATGAAAACACTGGGCAATGGTGGGAATTTGATGATGAGGAGGTTACTAACTTGGGTTGTCATCCATTTGGGGAAGGAGCTTCATCTTTTACTTCTAAATCTGTTAAGATGGACGCACTTAATTCTAATTGCTCTGAAGCAATGCTGGCTGACGGTAATGGTTTAGATGCCCCTCATTCACAATCTTCACTTGTGGAGACATTTACATCTGATGAGGCATACATGTTGATGTACCATCTTAGGCATAGCAAAAATGTTGGTGAAAAGGGGGACATGGTTTATGCCACTAACTTTAAAGAAGCAGATCGCAATGCAGTTACTGCACAAGACAGTGCTTGTGTCCCTTCTCATCTTGGTGACGAGATTCAAAATTTTAATGCCACATATCTTGATTCTTGCAACCAGTACAAACACAGGAAAGCGTTAGAAGTAAGTTGTATCAATGAGAGGAGACAAGAAGTTCGATCTATTTTAGCTGAATCTCCTGCCCAACCACAAGACCAACCGTACTTTTGGATCTCTAGTGAATGGCTTCGCCAGTGGGCTGATTCTATTGTTCCGACTGTTCTTGACAATACACCTATCCAATGTTCACATGGGAAAGTTCCGGTGTCTAAGGTTACCTCAATGAAGCGATTATCTTCTAAAGCTTGGGATAAATTATTGACTAAGTATGGTGGGGGGCCAACTCTTTCTCACAATGACTGCTGTTGGGATTGTCTGATCGAAGGGTCACATAATGTGGTGTCAGCTGACTCCTATCGGGATCAAAGAGAATCATTGAAGCAATTTGTACGAGCTTTTGTCAATGGAAATCATGAAGATGGATTGTACTATGTGTCTAGACCATGGCTGCAGCAATGGTTGAAAAGAAAAGTTGGTGATGCTCCCTCTGAAGCTGATGCTGGACCAACAACATCTATTAGTTGTCCACATGGACAACTTAGGCCTGACCAAGCTGTTGGGGCCAAGCGGTTGCTTGTTCCTGAGGGTTTCTGGTTTTTCTTATATAAAGATGCCATTACTGTAAAACCTGATGATCCTCTCGGTTGTCGTGCTTTTCCTTTAGGCTCAAGTGAATGTTTGCAATGCCGTGATGAAATATCTAAAGAGGCTTGCTTTGAGGACTCTATGAGATTAGTAAAACAAATGCAAAGACAAAATCATGAGAAGTTATCTGTTGGTAAAAGTATGCCACTTTCTTTACATTGCAAGTATTTCTTAGTTCCTTCATCGTGGATTTTAAAATGGAGAAATTACTTGGCTGTAAAGAATTCTGATACACCTGAAACTTTGGATGGGGTAATTGATTCACTGATGTGTGAAAAGCACTCACAGCTCGTACAAAGGCCTCCTGAACTGATTTGTAGACGTGGGACTATAATCTCAAGAGAATCTTCTGTAGATGGCTTAACCATCATATCGGAGAATGATTGGAAGTGCTTCTGTCAAGAATGGAGTGGTATTGAGACCAAAGGAATATCTGCAAGAATTGAGAATGTTAATGATTTGGAAGATGCTTTGAACGGATCCTGCAAAGATATGCCTATATGTGAGAATCAACTTGATCCTTTGGATAAAGTGAATAATGGAAGTGGGAATGGAGTGAATAGACAACTTGTGATTAAGACTAGTCCTGAGTACTCAACCGAGGATGGTCATGAGGCTGGCACTGGCATCAGGGAAGACCTCAATGAGGATTGTGATGGCTGGGCACTGAGGTGGCATCGTGCTACAGTCTATGTTTGTGAAAGTTGCATTGGAGAAAAGGAAAGCGTTGAGTTATTGCAGAAACTTAACTATTGCGATAAGGACATTAGTGTAATTCTTGTCCAAGGAAAGGAGGTCCCAAAATCTGTCTTGGATGCTGCAAAGCGTTTTGTTGAAACAGATAGGAGGGTTGTCAAGGAAAACCAGATACTACAAAAAGGCGATAGGAGAATTGATGTTGATAACGAAAATACTACGCTTGTAGATGTTAATATATTTGCTGGAGATCAGATTATTGTGAGGGACTCTCAGATCCATGAAAATCGAGATATTGCAGGTATGTTATTTGATACTGGTACTTGA 3222 0.3994 EISCCSPFFRARLFCCTMTRPTIRNKNKRQKHGDDDDISEIWRKIHKTGAVTEDDMSQLYMIWKPVCSGCRVNTKDNPNCFCALIPPPNGTRKSGLWQKMSDFLGSLGPDPTIDLRASDCSPAGLTNLGATCYANSILQCLYMNKYFRQGIFSVEPDLLQQQPVLDQLTRLFVQLYASKKAFVDSSPFVKTLELDNEVQQDSHEFLTLLLSLLECCLSHSKIAKARTIVQDLFRGSVSHVTTCSQCGRESEASYKMEDFYGIELNIKGLKCLDESLDDYLAIEELHGDNQYFCGSCKTRVDATRSIKLCTLPNVLNFQLKRYVFLPQNTMKKKVTSAFSFPAKLDMCDRLSEPSQNELIYDLSAVLIHKGTAVNSGHYIAHIKDENTGQWWEFDDEEVTNLGCHPFGEGASSFTSKSVKMDALNSNCSEAMLADGNGLDAPHSQSSLVETFTSDEAYMLMYHLRHSKNVGEKGDMVYATNFKEADRNAVTAQDSACVPSHLGDEIQNFNATYLDSCNQYKHRKALEVSCINERRQEVRSILAESPAQPQDQPYFWISSEWLRQWADSIVPTVLDNTPIQCSHGKVPVSKVTSMKRLSSKAWDKLLTKYGGGPTLSHNDCCWDCLIEGSHNVVSADSYRDQRESLKQFVRAFVNGNHEDGLYYVSRPWLQQWLKRKVGDAPSEADAGPTTSISCPHGQLRPDQAVGAKRLLVPEGFWFFLYKDAITVKPDDPLGCRAFPLGSSECLQCRDEISKEACFEDSMRLVKQMQRQNHEKLSVGKSMPLSLHCKYFLVPSSWILKWRNYLAVKNSDTPETLDGVIDSLMCEKHSQLVQRPPELICRRGTIISRESSVDGLTIISENDWKCFCQEWSGIETKGISARIENVNDLEDALNGSCKDMPICENQLDPLDKVNNGSGNGVNRQLVIKTSPEYSTEDGHEAGTGIREDLNEDCDGWALRWHRATVYVCESCIGEKESVELLQKLNYCDKDISVILVQGKEVPKSVLDAAKRFVETDRRVVKENQILQKGDRRIDVDNENTTLVDVNIFAGDQIIVRDSQIHENRDIAGMLFDTGT 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02514 1073 SUPERFAMILY Cysteine proteinases 121 465 IPR038765 -
Vimu1g02514 1073 SMART dusp 546 622 IPR006615 GO:0004843
Vimu1g02514 1073 ProSiteProfiles DUSP domain profile. 635 738 IPR006615 GO:0004843
Vimu1g02514 1073 ProSiteProfiles DUSP domain profile. 763 881 IPR006615 GO:0004843
Vimu1g02514 1073 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 77 465 - -
Vimu1g02514 1073 Pfam Ubiquitin carboxyl-terminal hydrolase 124 461 IPR001394 GO:0004843|GO:0016579
Vimu1g02514 1073 Gene3D - 520 618 IPR035927 -
Vimu1g02514 1073 CDD Peptidase_C19L 124 461 IPR033841 GO:0004843
Vimu1g02514 1073 ProSiteProfiles DUSP domain profile. 528 620 IPR006615 GO:0004843
Vimu1g02514 1073 FunFam ubiquitin carboxyl-terminal hydrolase 48 110 464 - -
Vimu1g02514 1073 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 124 139 IPR018200 GO:0004843|GO:0006511
Vimu1g02514 1073 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 360 378 IPR018200 GO:0004843|GO:0006511
Vimu1g02514 1073 Gene3D - 758 878 IPR035927 -
Vimu1g02514 1073 Gene3D Cysteine proteinases 113 464 - -
Vimu1g02514 1073 FunFam Ubiquitin carboxyl-terminal hydrolase 26 519 617 - -
Vimu1g02514 1073 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 123 464 IPR028889 -
Vimu1g02514 1073 SUPERFAMILY DUSP-like 532 620 IPR035927 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02514 Vimu-Chr1 36479020 36486851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02514 121 401 Miscellaneous Gene Families AT4G31670 29.530 6.61e-25 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02514 - - vum:124831297 1979.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02514 1 36479020 36486851 Vimu10g02851 10 39785218 39794977 PCT