Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02851 ATGACATCGGCATCCAAACCCAGCCAACCTCTGTCCCCTTTCAATTCCGTTTCTCTCTCTTCTCTCTATATTCACTCTCTCTCTCTTCCTCTCACTCTCACCCTTCCTTCATATGCTTCCTCAAAGTTTCGTTCTTCTCCCCTTCCTCTCTCTTATCTGTCTATCAGCCGTGCAATGATTGCCAAAACTTGGGTTTCCGTAATGAATAGGTTGTATTTGTACTGTAGAATGAGTAGACCATCAACACGAGGGAAAAATAAAAGACACAGACAAGGGGATGATGGCAACGGGACTGTGGAAATATGGAGGAAAATTCACAATAGTGGCGTGGTAACTCATGATGATATGAATAAGTTATACATGATCTGGAAACCAGTTTGTTCAGGATGTCGCAGCAATAGCAAAGACAACCCAAATTGCTTCTGTGCATTGGTTCCACCTCTAAATGGATCCCGGAAATCTGGCTTGTGGCAAAAGATGTCCGATTTTCTTGAAGGTCTTGGCCATGATCCTAATAAGGATCTACGGGCATCTGCTAATTCTCCTGCAGGTCTCACAAATCTTGGCGCAACATGCTATGCCAACAGTATACTTCAGTGTTTGTATATGAATCAATCTTTTAGAGAAGGCATCTTTTCTGTAGAACAAGATGTTTTACAACAACAGCCTGTGTTAGATCAGCTGACCCGACTTTTTGTGCAGTTGCATATTAGCAAAATGGCTTTTATAGATTCTTCTCCATTTGTAAGAACCCTGGAATTAGATAATGGAGTTCAGCAGGATAGTCATGAATTTCTAACACTGCTTCTCTCTTTGCTCGAGGGTTGTCTGAATCATTCAAAAGTGCCCAAGGCAAGAACAATAGTTCAAGATCTTTTCCGGGGAAGTGTGTCTCATGTGACAAAGTGCTCACAATGTGGAAGAGACTCTGAAGCTTCTTCCAAGATGGAAGATTTTTATGAACTGGAGTTGAATGTCAAAGGATTGAAAAGTTTAGATGAGAGCCTAGATGAATATCTCACTGTTGAAGAGCTTAATGGAGACAATCAATATTTTTGTGAGTCATGTAAAGGAAGAGTTGATGCTACTCGCAGCATCAAGCTGCGTACATTGCCCAAAGTACTTAATTTTCAACTTAAACGTTACATCTTCCTTCCTAAGACTACAACAAAGAAGAAAGTTAATTCTGCTTTCTCATTTCCTGCTGAACTTGATATGCGGCATAGAATGTCGGAGTTGTCTGAGTTTGATTTGGTGTATGATCTGTCAGCTGTATTGATTCACAAGGGAACTGGTGCTAATAGTGGCCATTACATTGCACATATTAAGGATGTAAACACTGGGCAATGGTGGGAATTTGATGATGAGCATGTTACTAATTTGGGTTGTCATCCATTTGGTGAAGGGTCTTCAAATTCTACCTCTAAATCCATCAAGAATGAGGCAATTAATGGGAATGGTTTGAATGCCTCTCATTTGCAATCTACACGTGTGGAGACATTTTTGTCTAGTGATGCGTACATGTTGATGTACCATCTTAAACATACGAAAAATGCAGGCGAAAGTGGGAGTGTAAGTTTTGGAGCTAGGCATAATGAAAGAGAGGGTGTTGAAGTTGCTTTGCAAAATGGTGCTTCTCTTCCATTTCATATTTATGATGAGATTCAAAATTTTAACTCCTCATATGATGAGGTTTGTCAGCAGTACAGCAAGATGAAAGAGTTTGAATTGGGTCGTATTACTGGGAGGAGACAGGAGGTTCGAACTGTTTTAGCTGAGGCTCCTGTTCAACCTTTGGAGCAACCATTTTACTGGATTTCTAGTGAATGGCTTCGCCAGTGGGCTGACAACATTGTTCCAATCCCTCTTGACAACTCGCCTGTTCAATGCTCACATGGGAAAGTCCCAGTTTCAAAGGTTACCTCAATGAAGCGGTTGTCTGCTAAAGCATGGGATATGTTGTTCTCCAAGCGAACTTTAGAAGTTGAGCGAATAGTTGTGTTGACCATAAACACATTTCTTCCTGGTGATGTCTTTTCTGGTATAATTAGCAGGAACTGCATGCTCTGCTGGACAGATGTAAATAATGATGATTTTGCATTTGATGGTTTATTTGTGTATCTCTTCCATATTCTTGTTCCTATTGCTGCTTCCGCTCTCACCATTTGCTGTAATAATAATATCAATGACGTGTTCCCTTTATTGACTTATGAAATTCAGTATGGTGGGGGGCCCGCATTATCTCATGATGACCACTGTTTGGATTGCCTGATTCATGGGGCTAAGACCGTGGTTTCAGCTGACTCCTACCGGGATAGAAGAGATTCAATGAAATCACTTGCACGGGATATTCTAGATGGAAACTGCCCGGATGGAAAGTTTTACATTTCCAGACAATGGTTGCAACAATGGTGGAAAAGGAAAGTTCTTGATGCCCCATCTGAAGCTGATGCTGGACCAACAGCAGCCATTAGTTGTCCTCATGATCAACTGCTGCCTGAGCAAGCTCCTGGTGCTAAGCGTGTGCTTATTCCTGAGAGTTTTTGGCTCTTCTTATATGAGGACGCAATATCTGTAAAGCCTGGTGATCCTTTGGGTGGCCCAACATTTTCTTCAGATTCTGAACAGTGTTCCCTATGCAGTAATGAATTATCAGAAGTAGCATGCTTTGAGGACTCCTTGAGATTAGTTAAACAAAAGCAACGTCAGAATCATGAGAAATTGTTCCAGGCTAAAAGTCTGCCACTTTCTCTAAACTGCAAGTATTTCTTGGTGCCTTCATCATGGATTTCAAAATGGAGAAATTACATCAATCCAACCCTGAAGAATTCAGATAAACCTGAAACTTTAGATGGTGCAATTGGTTCATTGTTATGTGAAAAGCACTCACAGCTTCTTGAAAGACCTCCGGAGTTGGTTTTCAGACGCGGTGCCATAATCCAGAAGGAGTCTTCTGTCGGTGGCTTAACCATTGTATCTGAGAATGATTGGAAACAGTTCTGTGAAGAATGGGGTGGTATTGAGACTAAAGGAATATCTGCAACTATTGATTATACTGGTAATCCAGACAATGTTTTGGCTGGATCCAGTGAAGAAATGCTGACATGCAAGGATCAGTTGGGCACAGCAGATAAAATGAATTATGAAAATGGAACTGGACTGATCTTCATCAAGACTTGTCCTGAGGTTTGTGAAAATTGCATTGGAGAAAGAGAGAGCTGTGAGCTAATGCAGAAACTTAATTATTCCAACGAGGACATATGTGTTATTCTTGTCCGTGGTAAGGAGGTACCAAGATCAATGTTAGAAGCTTCAAAGGGGTTTGTTGAAACCGATCGTCGAGTTTCCAAGCGCGCCCGTAAGACTAAAAACGGGAGTTCAATTAGTCTAAAAGTTTCTGCTTCAACAACTCTATATCAGCTGAAAATGATGATATGGGAATCCTTTGGGGTTGTTAAGGAAAACCAAATACTTCATAAAGGTGATAGGATAATTGATAGTGATAATGAAGATACTACCCTCGTGGATGTCAACATATTTGCTGGAGATCAGATTATAGTGAGAGACTCTGAGATCCACGAAAATCGAGATATTGCTGATGAGCTTTGCGATGATAAAAAGGATCTGCATACCGAGGAAGGGTTCCGTGGAACACTTCTTACAGCAAATGTTTCATCTCAGGTTGTTTAA 3690 0.4092 MTSASKPSQPLSPFNSVSLSSLYIHSLSLPLTLTLPSYASSKFRSSPLPLSYLSISRAMIAKTWVSVMNRLYLYCRMSRPSTRGKNKRHRQGDDGNGTVEIWRKIHNSGVVTHDDMNKLYMIWKPVCSGCRSNSKDNPNCFCALVPPLNGSRKSGLWQKMSDFLEGLGHDPNKDLRASANSPAGLTNLGATCYANSILQCLYMNQSFREGIFSVEQDVLQQQPVLDQLTRLFVQLHISKMAFIDSSPFVRTLELDNGVQQDSHEFLTLLLSLLEGCLNHSKVPKARTIVQDLFRGSVSHVTKCSQCGRDSEASSKMEDFYELELNVKGLKSLDESLDEYLTVEELNGDNQYFCESCKGRVDATRSIKLRTLPKVLNFQLKRYIFLPKTTTKKKVNSAFSFPAELDMRHRMSELSEFDLVYDLSAVLIHKGTGANSGHYIAHIKDVNTGQWWEFDDEHVTNLGCHPFGEGSSNSTSKSIKNEAINGNGLNASHLQSTRVETFLSSDAYMLMYHLKHTKNAGESGSVSFGARHNEREGVEVALQNGASLPFHIYDEIQNFNSSYDEVCQQYSKMKEFELGRITGRRQEVRTVLAEAPVQPLEQPFYWISSEWLRQWADNIVPIPLDNSPVQCSHGKVPVSKVTSMKRLSAKAWDMLFSKRTLEVERIVVLTINTFLPGDVFSGIISRNCMLCWTDVNNDDFAFDGLFVYLFHILVPIAASALTICCNNNINDVFPLLTYEIQYGGGPALSHDDHCLDCLIHGAKTVVSADSYRDRRDSMKSLARDILDGNCPDGKFYISRQWLQQWWKRKVLDAPSEADAGPTAAISCPHDQLLPEQAPGAKRVLIPESFWLFLYEDAISVKPGDPLGGPTFSSDSEQCSLCSNELSEVACFEDSLRLVKQKQRQNHEKLFQAKSLPLSLNCKYFLVPSSWISKWRNYINPTLKNSDKPETLDGAIGSLLCEKHSQLLERPPELVFRRGAIIQKESSVGGLTIVSENDWKQFCEEWGGIETKGISATIDYTGNPDNVLAGSSEEMLTCKDQLGTADKMNYENGTGLIFIKTCPEVCENCIGERESCELMQKLNYSNEDICVILVRGKEVPRSMLEASKGFVETDRRVSKRARKTKNGSSISLKVSASTTLYQLKMMIWESFGVVKENQILHKGDRIIDSDNEDTTLVDVNIFAGDQIIVRDSEIHENRDIADELCDDKKDLHTEEGFRGTLLTANVSSQVV 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02851 1229 ProSiteProfiles DUSP domain profile. 896 1016 IPR006615 GO:0004843
Vimu10g02851 1229 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 137 513 - -
Vimu10g02851 1229 Pfam Ubiquitin carboxyl-terminal hydrolase 184 511 IPR001394 GO:0004843|GO:0016579
Vimu10g02851 1229 SUPERFAMILY DUSP-like 584 657 IPR035927 -
Vimu10g02851 1229 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 420 438 IPR018200 GO:0004843|GO:0006511
Vimu10g02851 1229 Gene3D Cysteine proteinases 168 514 - -
Vimu10g02851 1229 Gene3D - 893 1012 IPR035927 -
Vimu10g02851 1229 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 183 514 IPR028889 -
Vimu10g02851 1229 ProSiteProfiles DUSP domain profile. 768 875 IPR006615 GO:0004843
Vimu10g02851 1229 FunFam ubiquitin carboxyl-terminal hydrolase 48 170 514 - -
Vimu10g02851 1229 ProSiteProfiles Ubiquitin domain profile. 1121 1187 IPR000626 GO:0005515
Vimu10g02851 1229 CDD Ubl_USP48 1120 1220 IPR044743 GO:0004197|GO:0004843|GO:0016579
Vimu10g02851 1229 Gene3D - 1119 1190 - -
Vimu10g02851 1229 SMART dusp 596 673 IPR006615 GO:0004843
Vimu10g02851 1229 CDD Peptidase_C19L 184 511 IPR033841 GO:0004843
Vimu10g02851 1229 SUPERFAMILY Ubiquitin-like 1121 1188 IPR029071 -
Vimu10g02851 1229 SUPERFAMILY Cysteine proteinases 181 515 IPR038765 -
Vimu10g02851 1229 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 184 199 IPR018200 GO:0004843|GO:0006511
Vimu10g02851 1229 ProSiteProfiles DUSP domain profile. 578 670 IPR006615 GO:0004843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02851 Vimu-Chr10 39785218 39794977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02851 181 511 Miscellaneous Gene Families AT4G31670 28.775 2.08e-28 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02851 - - gmx:100815770 1011.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02851 10 39785218 39794977 Vimu10g02851 10 39785218 39794977 ECH
Vimu1g02514 1 36479020 36486851 Vimu10g02851 10 39785218 39794977 PCT