Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02489 ATGCAACCCCCACTCAGTTCAAGAATCAATTTGGTGGAATTAAAAGCGCAGATTGTGAAGAGGATTGGAGCGGAGAAGTCAAAGCAGTACTTTTATTACTTGAACAGGTTTCTGAGTCAGAAGCTGAGCAAGACTGAATTTGATAGGTCATGTTATCGGGTACTTGGCAGGGAGAATCTTCCGTTACACAATCACTTCATAAAGTCAATTTTGAAAAATGCTTGCCAAGCCAAGACCCCACCGCCAGTCCAGCAACTGACAGGTCCTTCAAAAACTGGAACACTTGTCAGTCATGCATCTGGTCGAGATGATGGACATGAACATAGTTTTGTTAACATGCAAAATCAGAATGTTTCCATTTGGTCCAATGGGGTTGTGCCTGTTTCGCCACGCAAGTTAAGGTCTGGTGGCCGTGATCGTAAGCTTAAAGATAGACTGAGCCCTCTTGGACCAAATGGAAAAGTTGATTCTGTTGCTCATCAATCCACAGCTACAGAAGACAGCAGTAGTAAGGTTGATATGGCGAATGATATTCTTACTCCATGTGATTATCAAAGACCTACACAACATCTTCAGGTATTTGATGAGCTTCTGGAGAATGGTATGGTTGATGCTCTTCAGAGACCTGCTGAGAAACCAAGAATACATGGGAAAGGACCAACTGATGTATCAGTTATTGAAAATGGGGAAGAGGTGGAGCAATTACGCCGCCTAAATTTTTCTAGAAGTCCGTTGGTAGCACCACTTGGGATTCCCTACTGCACCACAAGTGTTGGTGGGGCCCGCAAAGCGTTGCCATTGAATGGCACTAGTGATTTTGTTAGTTTTTGCGACAGTGGTAGGTTATCTAATACAGATACATTGAGAAGGCGCATGGAGCAGATTGCCACAGTTCAGGGTCTTGGAGGTGTTTCTATGGAATGTGCAAATACATTGAATAATATGTTAGATGTGTACTTGAAAAGGTTGATCAGATCTTGTGTTAATTTAGTGGGAGCTAGGTCTGCAAATGAACATAGGAAGCTCCCTGTCTCGAAACAGCAGATTCAGGGGAAGGTCCTTAATGGTGTCTGGCCAAATAATCATTCACATGTGCATAGTGGGCTGACAGAATCTGAGGCTGGACACGGACCACCACACTTGGTATCTTTGCATGATTTTAAAGTTGCTATGGAGCTAAATCCACAGCTACTTGGAGAGGATTGGCCGGTACAATTGGAGAAAATTTCTATGCGATCATTTGAGGAATGA 1251 0.4333 MQPPLSSRINLVELKAQIVKRIGAEKSKQYFYYLNRFLSQKLSKTEFDRSCYRVLGRENLPLHNHFIKSILKNACQAKTPPPVQQLTGPSKTGTLVSHASGRDDGHEHSFVNMQNQNVSIWSNGVVPVSPRKLRSGGRDRKLKDRLSPLGPNGKVDSVAHQSTATEDSSSKVDMANDILTPCDYQRPTQHLQVFDELLENGMVDALQRPAEKPRIHGKGPTDVSVIENGEEVEQLRRLNFSRSPLVAPLGIPYCTTSVGGARKALPLNGTSDFVSFCDSGRLSNTDTLRRRMEQIATVQGLGGVSMECANTLNNMLDVYLKRLIRSCVNLVGARSANEHRKLPVSKQQIQGKVLNGVWPNNHSHVHSGLTESEAGHGPPHLVSLHDFKVAMELNPQLLGEDWPVQLEKISMRSFEE 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02489 416 MobiDBLite consensus disorder prediction 129 172 - -
Vimu1g02489 416 MobiDBLite consensus disorder prediction 80 109 - -
Vimu1g02489 416 MobiDBLite consensus disorder prediction 80 97 - -
Vimu1g02489 416 MobiDBLite consensus disorder prediction 156 172 - -
Vimu1g02489 416 Pfam Transcriptional regulator of RNA polII, SAGA, subunit 6 331 IPR024738 GO:0070461
Vimu1g02489 416 MobiDBLite consensus disorder prediction 133 147 - -
Vimu1g02489 416 PANTHER TRANSCRIPTIONAL ADAPTER 1 1 415 IPR024738 GO:0070461
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02489 Vimu-Chr1 36126600 36127850 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02489 - - gmx:100811524 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02489 1 36126600 36127850 Vimu1g02489 1 36126600 36127850 ECH
Vimu1g02489 1 36126600 36127850 Vimu10g02837 10 39663525 39664784 PCT