Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02462 ATGGCGACGGCGTTGCTGGACGATGAAACTGCGAAGAAAGTCGTACGGCAGGTGGAGTTCTACTTCAGTGATAGCAACCTTCCCACAGACAAATTTTTGAAGAAAACCGTCAGTGAAAGCGAAGATGGCATGGTTAGTTTGGCTCTTATTTGTTCTTTTAATCGGATGCGAAAGCACCTCAAACTAGAGGAAGTTAAGTCGGCTGAGGTGCCCGATGATACAGTCAAAGCTGTTGCTCAAGCTTTGAAAGATTCGGCTTTGGTCAGAGTCTCAGAAGATGGCGACATTAAACTTGGAGACTGTGTTTTCCCCTTGCCATGCTGTAGCAATGTGAATAAGTTGTCGAAGTCAACTAAGCTTCTGAAGCCAGAAGAGGTAATTGAGCAGGTAGAGATAAGAACAATTGCTGCATCGCCATTTCAATTTGATGTTAAGCTTGAAGATGTGGAGGCATTCTTTGGTCAATATGCCAAGGTTAACAGCGTGCGGTTGCCTCGCCATGTTGGAGACAAAAGGATTTTTTGTGGCACTGCTCTTGTTGAGTTTTCAACAGATGAAGAAATGAAAACTTTTTTGAGTCAAAGTCATGTCTATGCGGGGGCTGAGCTAGAATTAAAGCCAAAGAAGGACTTTGACGTGCAGAGAGAGGAAGAATTAAAAGAGCAAGAAAAATTTCGTCCATCTGGGGGTGTAGATCACCAAAATAACATAAGTACAGAAGCAGACTACCCTAAAGGCTTACTTATAGCCTTCAAGCTAAAGACTATTTCTGATGAAGTTCCTTCAGAACAAAATAACCCTGAACAACCAACCAATGATTCTGATGATATCTCCAAAACCGATCAACAAAATCCATCTGAAATTGCTGCTGAGGAAAGTGGTAAAAAGATATCAGAAAATGACGAGAATGATAAAGAAAACAGTGAGGTGAGTGAAGGAAAAGGGACCGAGGGTGAGGAAAAGAGTAAAGAAACTGATGGAAAAAATTCTGCTACTCCGGACAAGGACAACAAGTTTGTTGTCGTACGACAGGATTTGAAAGTTGTCTTTGAGAAGTTTGGTACCGTGAAGTACATTGATTTCAAGGTTGGAGAAGAGTCAGGATATATCCGATTTGAAGAACCTGAAGGTGCTCAGAAAGCTCGTGCAGCTGCAGTTCTTTCTGAAAAGGAGGGCTTAGTTGTCAAGAATTGTATTGCTACTCTGGATCCAGTGACTGGTGAGGCGGAGAGAGAGTACTGGAGCCTGCTTCGTGGTAATCAGGAAAAACAGAGAGGATTTAAGAATAACCGAGGATGGGGAAGAAAGCATGGGAGAGGGGGTAAATTCAACCGGTCCCGAGAGAATGAATCTGCATCAAATCGCCCAAATAAAGTTAGAAAGTTTTAA 1389 0.4248 MATALLDDETAKKVVRQVEFYFSDSNLPTDKFLKKTVSESEDGMVSLALICSFNRMRKHLKLEEVKSAEVPDDTVKAVAQALKDSALVRVSEDGDIKLGDCVFPLPCCSNVNKLSKSTKLLKPEEVIEQVEIRTIAASPFQFDVKLEDVEAFFGQYAKVNSVRLPRHVGDKRIFCGTALVEFSTDEEMKTFLSQSHVYAGAELELKPKKDFDVQREEELKEQEKFRPSGGVDHQNNISTEADYPKGLLIAFKLKTISDEVPSEQNNPEQPTNDSDDISKTDQQNPSEIAAEESGKKISENDENDKENSEVSEGKGTEGEEKSKETDGKNSATPDKDNKFVVVRQDLKVVFEKFGTVKYIDFKVGEESGYIRFEEPEGAQKARAAAVLSEKEGLVVKNCIATLDPVTGEAEREYWSLLRGNQEKQRGFKNNRGWGRKHGRGGKFNRSRENESASNRPNKVRKF 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02462 462 ProSiteProfiles xRRM domain profile. 325 450 IPR014886 GO:0003723
Vimu1g02462 462 MobiDBLite consensus disorder prediction 425 462 - -
Vimu1g02462 462 MobiDBLite consensus disorder prediction 214 228 - -
Vimu1g02462 462 CDD RRM1_La 134 206 - -
Vimu1g02462 462 MobiDBLite consensus disorder prediction 443 462 - -
Vimu1g02462 462 Pfam RNA binding motif 342 431 IPR014886 GO:0003723
Vimu1g02462 462 MobiDBLite consensus disorder prediction 214 238 - -
Vimu1g02462 462 FunFam La protein 2 6 100 - -
Vimu1g02462 462 CDD LA_like_plant 10 94 - -
Vimu1g02462 462 PANTHER LUPUS LA PROTEIN-RELATED 11 329 IPR045180 -
Vimu1g02462 462 MobiDBLite consensus disorder prediction 292 335 - -
Vimu1g02462 462 SMART la 8 99 IPR006630 -
Vimu1g02462 462 Gene3D - 4 97 IPR036388 -
Vimu1g02462 462 SMART rrm1_1 338 396 IPR000504 GO:0003723
Vimu1g02462 462 SMART rrm1_1 134 206 IPR000504 GO:0003723
Vimu1g02462 462 SUPERFAMILY "Winged helix" DNA-binding domain 7 94 IPR036390 -
Vimu1g02462 462 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Vimu1g02462 462 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vimu1g02462 462 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vimu1g02462 462 Gene3D - 331 432 IPR012677 -
Vimu1g02462 462 Pfam La domain 14 83 IPR006630 -
Vimu1g02462 462 MobiDBLite consensus disorder prediction 260 335 - -
Vimu1g02462 462 SUPERFAMILY RNA-binding domain, RBD 343 421 IPR035979 GO:0003676
Vimu1g02462 462 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 193 IPR000504 GO:0003723
Vimu1g02462 462 SUPERFAMILY RNA-binding domain, RBD 125 212 IPR035979 GO:0003676
Vimu1g02462 462 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 218 IPR000504 GO:0003723
Vimu1g02462 462 MobiDBLite consensus disorder prediction 260 289 - -
Vimu1g02462 462 Gene3D - 126 225 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02462 Vimu-Chr1 35699685 35704536 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02462 K11090 - gmx:100792984 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02462 1 35699685 35704536 Vimu1g02462 1 35699685 35704536 ECH
Vimu1g02462 1 35699685 35704536 Vimu10g02765 10 38993615 38996883 PCT