Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02765 ATGGCAACGCAATCGTTGGACGAAGAAACAACTAAGAAAGTGATACGACAAGTGGAGTTTTATTTCAGCGACAGCAACCTTCTCACCGATGGTTTTATGAGAAAGAGTATCACTGAGAGCGAAGATGGCTTGATTAGTTTGGCTCTGATTTGCTCCTTTAATCGGATGCGTAAGCACCTTAGTTTGGGTGATGTGAATCCCGATGGAGTGCCCCAAGATATCGTGAATGCTGTTGCGCAGACTTTGAGAAGTTCGGCTTCACTCAAGGTCTCTGAAGATGGGAAAAAAGTTGGCAGAACAACAGAACTTCCGAAACCAGAAGTTGTTGAGCAGGTGGAGATAAGAACACTTGCTGTATCACCATTTGAATATGATCTGAAACTTGAAGATGTGGAGAAATTCTTTGGTCAATATGCTAAGGTTAATAGTGTTCGGCTTCCCCATCATGTGCGAGACAAAAAGTTCTTCTGTGGCACTGCCCTTGTTGAATTCTCATCAGATGAAGAAGTAGAAAAACTTATGAAAGAGAAATTTGTGTATGCTGGGGCTGAGTTAGAATTAAAACTCAAGAAGGACTTTGATGCAGAGAGGGAAAAAGAATTAGAAGATTTTGAAAAATCTCGTCCACCTTTGGGTTCAAATCACCAGAATAACTCAAATGAAGAAGATGAAAGCTACCCTAAAGGCTTAATTATTGCCTTCAAACTAAAGAGTATTTCAGAAGAAATTCCTTCAGACCAAAGCGTTGCTGATCAACATAATAGTGCTGTCCCCAAAACAGGTGAAAAGCCTGAAATTGCTGCTGGAGAAAATGACCGAAAGGTGGATGAAGAAAACAATGAGACAAAAGAGGCAAAGGAAACTGGAAGTCAAGACAACAATCAGATGGAAGAAGCAAAGGAAACTGGAAGTCAAGACAACAACAATGAGATGGGAGAATCCAAGGAAACTGGAAGTCAAGACAACAACAATGAGATGGGAGAATCCAAGGAAACTGGAAGTCAAGACAACAATGAGATGAAAGAAGAAAAGGAAACTGAAAGCAAAGAAAAGAATGAAACAAAAGAAACAAATGAAACCGAAAGAGCAGAAAAGAAGCCACAAGCCGGTGAAAAATTTTCTGCTGCTGCTTACAAGGACAACATGGATGTAGTCTCACGTGAGGATTTAAGGAGTGTCTTCGAAAGCTTTGGTACAGTGAAGTACATCGATTTCAAGATTGGAGAAGTGTCAGGATATATTCGATTTGAAGAAACGGAAGCTTCTCAGAAAGCTCGTGCTGCTGCAGTTATTTCAGAAAAGGGCGGTTTGGTGGTAAAGAATTTCATTGCTATTTTAGATCCAGTGACTGGTGAGGCCGAGAAAGAATACTGGAGCCGTCTTCGTGGTAATCAAGGCAAGCACCACCGAGGATTTAAGAATAAGCAAGGAAGGTACGTGGGTGGAACACAAATTAGTTATATTGTCATTGCAGGGGAGGATGGCATGGTAGAGGGAGCAAACATGCACGCTCTAGAGAGAATGGTTCTAGAGTTGGTCGCGCAAATAAGACTCAGAAAATTGGTGCTGCATAATTTCCATATCAACCAGCTTACTGCTTCTTGA 1605 0.4125 MATQSLDEETTKKVIRQVEFYFSDSNLLTDGFMRKSITESEDGLISLALICSFNRMRKHLSLGDVNPDGVPQDIVNAVAQTLRSSASLKVSEDGKKVGRTTELPKPEVVEQVEIRTLAVSPFEYDLKLEDVEKFFGQYAKVNSVRLPHHVRDKKFFCGTALVEFSSDEEVEKLMKEKFVYAGAELELKLKKDFDAEREKELEDFEKSRPPLGSNHQNNSNEEDESYPKGLIIAFKLKSISEEIPSDQSVADQHNSAVPKTGEKPEIAAGENDRKVDEENNETKEAKETGSQDNNQMEEAKETGSQDNNNEMGESKETGSQDNNNEMGESKETGSQDNNEMKEEKETESKEKNETKETNETERAEKKPQAGEKFSAAAYKDNMDVVSREDLRSVFESFGTVKYIDFKIGEVSGYIRFEETEASQKARAAAVISEKGGLVVKNFIAILDPVTGEAEKEYWSRLRGNQGKHHRGFKNKQGRYVGGTQISYIVIAGEDGMVEGANMHALERMVLELVAQIRLRKLVLHNFHINQLTAS 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02765 534 CDD LA_like_plant 10 99 - -
Vimu10g02765 534 Coils Coil 337 364 - -
Vimu10g02765 534 Gene3D - 108 205 IPR012677 -
Vimu10g02765 534 Gene3D - 353 477 IPR012677 -
Vimu10g02765 534 Pfam La domain 14 83 IPR006630 -
Vimu10g02765 534 SMART la 8 100 IPR006630 -
Vimu10g02765 534 MobiDBLite consensus disorder prediction 295 331 - -
Vimu10g02765 534 MobiDBLite consensus disorder prediction 332 369 - -
Vimu10g02765 534 SUPERFAMILY RNA-binding domain, RBD 385 470 IPR035979 GO:0003676
Vimu10g02765 534 MobiDBLite consensus disorder prediction 244 372 - -
Vimu10g02765 534 MobiDBLite consensus disorder prediction 210 224 - -
Vimu10g02765 534 Pfam RNA binding motif 385 475 IPR014886 GO:0003723
Vimu10g02765 534 Gene3D - 2 104 IPR036388 -
Vimu10g02765 534 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 175 IPR000504 GO:0003723
Vimu10g02765 534 PANTHER LUPUS LA PROTEIN-RELATED 10 355 IPR045180 -
Vimu10g02765 534 SMART rrm1_1 116 188 IPR000504 GO:0003723
Vimu10g02765 534 SMART rrm1_1 376 440 IPR000504 GO:0003723
Vimu10g02765 534 SUPERFAMILY "Winged helix" DNA-binding domain 6 107 IPR036390 -
Vimu10g02765 534 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 200 IPR000504 GO:0003723
Vimu10g02765 534 MobiDBLite consensus disorder prediction 265 294 - -
Vimu10g02765 534 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vimu10g02765 534 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vimu10g02765 534 PRINTS Lupus La protein signature 156 174 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vimu10g02765 534 SUPERFAMILY RNA-binding domain, RBD 107 192 IPR035979 GO:0003676
Vimu10g02765 534 ProSiteProfiles xRRM domain profile. 364 487 IPR014886 GO:0003723
Vimu10g02765 534 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Vimu10g02765 534 CDD RRM1_La 116 188 - -
Vimu10g02765 534 MobiDBLite consensus disorder prediction 200 226 - -
Vimu10g02765 534 FunFam La protein 2 6 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02765 Vimu-Chr10 38993615 38996883 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02765 K11090 - gmx:100803099 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02765 10 38993615 38996883 Vimu10g02765 10 38993615 38996883 ECH
Vimu1g02462 1 35699685 35704536 Vimu10g02765 10 38993615 38996883 PCT