Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02407 ATGAAGTATGGTTTACCCTTTGTGTCCCCACACAACATTCTAGTATCAATAATCAATGGCACAGGAGCTGTAATCGAGATGATATACGTTTTCATCTTCGTGTTGTTTGCACCCAAGAAAGAGAAGGCAAAGATTCTTGGGCTTTTCTCGTTCGTGGTGGCAGTGTTCTCTGGTGTTGTTCTGGTGTCTCTGTTGGCTCTGCATGGAAACACCAGACAACTCTTCTGTGGCTTCGCTGCTGCAATATTTTCCATCATCATGTATGGGTCACCTCTCTCCATCATGGTAAGCAAACTTCAATTTCTATATCGAATAATTTCATCACATCCTTATCATGTCATCATGGCATGGCCAGCTTGCCCCTGTCTCTTCATTTTCCCTTTTCCTCTTTTGGCAAATTACTTTTTCTCATGTTGTCTTTCTTCTTAA 429 0.4172 MKYGLPFVSPHNILVSIINGTGAVIEMIYVFIFVLFAPKKEKAKILGLFSFVVAVFSGVVLVSLLALHGNTRQLFCGFAAAIFSIIMYGSPLSIMVSKLQFLYRIISSHPYHVIMAWPACPCLFIFPFPLLANYFFSCCLSS 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02407 142 PANTHER RAG1-ACTIVATING PROTEIN 1 2 97 IPR047664 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02407 Vimu-Chr1 34883030 34886155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02407 3 95 Miscellaneous Gene Families AT1G21460 72.043 2.40e-40 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02407 K15382 - gmx:100799083 144.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02407 1 34883030 34886155 Vimu1g02407 1 34883030 34886155 ECH
Vimu1g02407 1 34883030 34886155 Vimu10g02380 10 34686398 34687329 PCT