Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02358 ATGCGTACACGTGGCAGCTATGCGTTGCTTGCCTCTTTCATTCGTTTTTCCTTTCTTCTCTTTATAGAGCTTCTCCTCCCATTCGCTGTTTCAGAGAAGCACACCAAAGCTTCTCTGCTCGTAGGAACCAAAAGAAAGGGGCGACAAAAGGGGCAAAGGGATTCTCTATGCCTTATCCTTTGTTTTCCTCCCCCTTTTGTTACAGCTGGGAAAGTTGAAGCTTTTTGTTGTGCTGCAACTGAAATGGTTGGCAAGGATAATCTGAGGGCTGAGGACTTGAACTTGTGTTTTGAGAGACTTATGATGGTGGCTGGGAGTGGGAACAGTGAGAAAGGGGTGAACTTGAAGGTTGGGGTGATTACCGAGTGGAAGGATATTCCTGTGGAACTTTTGATGCAAATTTTGTCCCTTGTGGATGATCAGACAGTGATCACCGCTTCTGGAGTTTGTCGTGGCTGGAGAGATGCTATCTACTTTGGCCTTGCTCGTTTATCACTATCATGGTATATTTTTCTCTCTCTTGATGCCATATATCCTTACCTGCTGGCCTTCTGTTTCTCTCCAATTGGGGATTTTGTTATGTGA 585 0.4513 MRTRGSYALLASFIRFSFLLFIELLLPFAVSEKHTKASLLVGTKRKGRQKGQRDSLCLILCFPPPFVTAGKVEAFCCAATEMVGKDNLRAEDLNLCFERLMMVAGSGNSEKGVNLKVGVITEWKDIPVELLMQILSLVDDQTVITASGVCRGWRDAIYFGLARLSLSWYIFLSLDAIYPYLLAFCFSPIGDFVM 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02358 194 CDD F-box_AtSKP2-like 122 168 - -
Vimu10g02358 194 FunFam F-box protein SKP2A isoform A 120 161 - -
Vimu10g02358 194 Gene3D - 120 164 - -
Vimu10g02358 194 SUPERFAMILY F-box domain 123 162 IPR036047 GO:0005515
Vimu10g02358 194 Pfam F-box-like 124 157 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02358 Vimu-Chr10 34375325 34376410 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02358 K03875 - gmx:100797840 172.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02358 10 34375325 34376410 Vimu10g02358 10 34375325 34376410 ECH
Vimu1g02397 1 34701175 34703451 Vimu10g02358 10 34375325 34376410 PCT