Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01955 ATGTACGTTGTAAAGAGGGACGAACGCCAAGAAGCGGTGCACTTCGACAAAATAACCGCTCGCCTCAAGAAACTCAGTTATGGCTTGAGCACCGTTCACTGCGATCCCGTTCTCGTCGCTCAGAAAGTCTGCGCCGGCGTCTACAAAGGGGTCACCACCAGTCAACTCGATGAATTGGCCGCCGAAACAGCCGCCGCCATGACCACAAACCATCCCGATTACGCTTGTTTGGCTGCTAGGATTGCCGTTTCGAATCTCCACAAGAACACCAAGAAGTCGTTCTCGGAGACGATCAAGATCATGTACTATCATATTAACAAGAAATCGGGGTTGAAGGCTCCTCTGGTCGCTGATGATGTTTATGAGATAATTATGAAGAATGCTTCTCGTTTGGACAGCGAGATAATCTATGACAGGGACTTCGACTATGATTATTTTGGGTTCAAAACCCTTGAGAGGTCTTACCTCTTAAAGGTTCAAGGGAAGGTCGTGGAAAGGCCGCAACACATGTTGATGAGAGTCGCGGTTGGGATTCACAAGGATGACATAGAATCTGCTGTCAGAACTTACCACATGATGTCTCAACGATGGTTCACCCACGCATCTCCTACTCTTTTCAATGCTGGAACTCCTAGGCCTCAACTGAGTAGCTGCTTCCTTGTGTGCATGAATGATGATAGCATAGAGGGGATATATGAAACTTTGAAGGAGTGTGCTATCATTAGTAAATCAGCTGGAGGAATCGGTGTCTCTGTCCACAACATTCGTGCTACGGGCAGTTATATTCGTGGGACAAATGGGACGTCCAACGGCATTGTTCCAATGTTACGTGTGTTCAATGATACTGCCCGCTATGTTGATCAGGGGGGAGGCAAGAGGAAAGGAGCATTTGCTGTGTACTTGGAGCCATGGCACGCTGATATGTTCGAGTTTTTGGATTTAAGAAAAAATCATGGAAAGGAGGAACATCGTGCACGAGATCTGTTTTATGCTCTTTGGGTGCCTGATCTCTTTATGGAAAGAGTTCAGAGTAATGGACATTGGTCTTTGTTTTGCCCCAATGAAGCACCAGGTTTGGCAGATTGTTGGGGTCAGGAATTTGAGGAGCTTTATCATCGATATGAAAGAGAAGGGAAAGCAAAGAAGGTTGTCCAGGCACAGAGCCTGTGGTTTGAAATTCTGAAATCACAGATAGAAACTGGAACCCCTTACATGCTTTTTAAGGACACTTGCAATAGGAAAAGCAACCAACAAAATTTGGGCACAATTAAATCGTCAAACTTGTGTACTGAGGTAATTGAGTATTCAAGTCCAACTGAAACTGCTGTGTGCAATCTTGCATCCATTGCACTACCACGATTTGTAAGAGAGAAGGATGTTCCGATGGAATCTCATCCATCTAAGCTTGTTGGAAGTACTGGCTCTCGGAATCGGTATTTTGACTTTGATAAACTAGCGGAGATTACTGCTCTGGTCACAACCAACCTGAACAAAGTGATTGATGTTAATTACTATCCGATTGAAAATGCAAAGCGGTCAAACTTACGGCACAGACCCATTGGTATTGGAGTACAGGGTCTTGCTGATGCTTTCATACTGCTTGGTATGCCGTTTGATTCACCAGAGGCTCAGCACTTAAACAAGGAAATATTTGAGACTATTTACTATCATGCACTGAAAACTTCATCTGAGTTGGCTGCAAAAGAAGGTTCCTATGAGACATACAGTGGTAGTCCTGTAAGCAAGGGAATTCTCCAGCCAGACATGTGGGGTGTGACGCCCTCAAGACGTTGGGATTGGGGTGCACTAAGGGAGATGATATCAGAGAATGGTGTGAGAAATTCACTTCTCGTGGCTCCTATGCCTACTGCATCCACTAGTCAGATTCTTGGAAATAATGAGTGCTTTGAACCATATACTTCAAATATCTATAGTCGTAGAGTTTTAAGTGGTGAGTTTGTTGTTGTCAACAAGCATCTTCTTCATGACTTGACGGAAATGGGACTGTGGTCTCCTACACTGAAGAATAATATTATCTATGAAGATGGCTCTGTACAGAAAATTCCAGAAATACCTTATGAACTGAAGACCATATACAAAACTGTTTGGGAGATTAAACAAAGGACATTGGTAGATATGGCTGCTGATCGAGGATGCTACATAGATCAGAGCCAAAGCTTAAATATTCACATTGATCAACCCAACTTCGGAAAACTGACTTCTTTGCATTTCCATGCATGGTCCAAGGGTCTGAAGACAGGAATGTACTATCTTCGATCACGAGCTGCAGCTGATGCTATCAAATTCACCGTTGACACCGCTGTTCTCAAAGAAAAGTCTAATGAAATGCAGGAAAACTGCGATGTGGACTGTGATGATAATACAAAAATGGCACAAATGTTGTGCTCTTTAACCAATCGTGAAGAATGCCTAGCTTGTGGGAGTTGA 2448 0.4379 MYVVKRDERQEAVHFDKITARLKKLSYGLSTVHCDPVLVAQKVCAGVYKGVTTSQLDELAAETAAAMTTNHPDYACLAARIAVSNLHKNTKKSFSETIKIMYYHINKKSGLKAPLVADDVYEIIMKNASRLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIESAVRTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMNDDSIEGIYETLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADMFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGHWSLFCPNEAPGLADCWGQEFEELYHRYEREGKAKKVVQAQSLWFEILKSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEVIEYSSPTETAVCNLASIALPRFVREKDVPMESHPSKLVGSTGSRNRYFDFDKLAEITALVTTNLNKVIDVNYYPIENAKRSNLRHRPIGIGVQGLADAFILLGMPFDSPEAQHLNKEIFETIYYHALKTSSELAAKEGSYETYSGSPVSKGILQPDMWGVTPSRRWDWGALREMISENGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKNNIIYEDGSVQKIPEIPYELKTIYKTVWEIKQRTLVDMAADRGCYIDQSQSLNIHIDQPNFGKLTSLHFHAWSKGLKTGMYYLRSRAAADAIKFTVDTAVLKEKSNEMQENCDVDCDDNTKMAQMLCSLTNREECLACGS 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01955 815 Pfam Ribonucleotide reductase, all-alpha domain 142 212 IPR013509 GO:0004748|GO:0005524|GO:0006260
Vimu10g01955 815 ProSitePatterns Ribonucleotide reductase large subunit signature. 600 622 IPR013346 -
Vimu10g01955 815 ProSiteProfiles ATP-cone domain profile. 1 92 IPR005144 -
Vimu10g01955 815 Pfam ATP cone domain 1 89 IPR005144 -
Vimu10g01955 815 CDD RNR_I 167 760 - -
Vimu10g01955 815 Pfam Ribonucleotide reductase, barrel domain 216 757 IPR000788 -
Vimu10g01955 815 NCBIfam ribonucleoside-diphosphate reductase subunit alpha 145 761 IPR013346 -
Vimu10g01955 815 Gene3D - 74 768 - -
Vimu10g01955 815 FunFam Ribonucleoside-diphosphate reductase 74 767 - -
Vimu10g01955 815 PANTHER RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN 1 814 IPR039718 -
Vimu10g01955 815 SUPERFAMILY PFL-like glycyl radical enzymes 215 770 - -
Vimu10g01955 815 PRINTS Ribonucleotide reductase large chain signature 518 540 IPR000788 -
Vimu10g01955 815 PRINTS Ribonucleotide reductase large chain signature 423 434 IPR000788 -
Vimu10g01955 815 PRINTS Ribonucleotide reductase large chain signature 611 638 IPR000788 -
Vimu10g01955 815 PRINTS Ribonucleotide reductase large chain signature 293 312 IPR000788 -
Vimu10g01955 815 PRINTS Ribonucleotide reductase large chain signature 480 503 IPR000788 -
Vimu10g01955 815 PRINTS Ribonucleotide reductase large chain signature 546 569 IPR000788 -
Vimu10g01955 815 SUPERFAMILY R1 subunit of ribonucleotide reductase, N-terminal domain 6 214 IPR008926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01955 Vimu-Chr10 28401578 28405995 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01955 K10807 - gmx:100791639 1529.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01955 10 28401578 28405995 Vimu10g01955 10 28401578 28405995 ECH
Vimu1g02394 1 34651945 34660261 Vimu10g01955 10 28401578 28405995 PCT