Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02341 ATGGCTAACAACGCTGCTGCCTGTGCTGAGAGAGCAACTAGTGACATGCTCATTGGCCCGGACTGGGCTATCAACATAGAGTTGTGTGATATCATTAATATGGACCCGGGGCAAGCAAAGGATGCATTGAAGATACTCAAAAAGCGTTTGGGCAGTAAAAATCCAAAAATACAGCTTCTGGCACTTTTTGTATTGGAGACCCTCAGTAAAAATTGTGGTGAAAGTGTATTTCAGCAGATAATCGAGCGGGATATCTTACATGAAATGGTTAAGATAGTGAAGAAGAAGCCAGATTTAAATGTGAGGGAAAAGATACTGATTTTAATTGATACATGGCAAGAAGCTTTTGGGGGGCCAACTGGGGTTTATCCTCAATATCATGCAGCGTATAATGAATTGAAGTCTGCGGGAGTTGAGTTTCCACCACGAGATGAGAATAGTGTACCATTCTTCACTCCCCCTCAAACTCAGCCAATTGTTCATGCTGCTGAAGAATTTGATGACGCTACTATTCAGGCTTCTCTCCAGTCAGATGCATCTGGCCTTAGTTTGACAGAGATTCAAAATGCTGAAGGACTAGCTGATGTGTTGATGGAAATGCTTAGTGCCTTGAATCCTAAAGACCATGAGGGTGTGAAGGAGGAAGTGATTGTTGACCTTGTTGACCAGTGCCGTTCATACCAAAAGCGGGTCATGCTTCTTGTAAACAGTACTACGGATGAGCAGCTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCGTGTGCTCCGTAGACATGATGATATTGTGAAAGGAACTTCTGATTCAGGTGCTAGAGAAGCAGAAACTTCGGTCCTGCCACTTGTAAATGTAAACCACGAAGATGATGAAACAGAAGAGGATTTTGCTCAACTAGCTCATAGGTCATCACGTGATGCTCATGCACAGAATAGGAAACCAATCTATGACAAGGCAGAACCAGGGAGGATAAACCCAGTTCTTCCCCCACCACCAGCATCAAAGAAGCCTGTCTACTCTGGCACTGGTGTGGTTGACTATCTCAGTGGTGATACATACAAGACAGAAGGATCTCAAAACTCAGAACCCGCTTCGTTTGCAGCTCCCGTTCACTCTAGCCCTAATCCAACAACGTCATCAGTGTCTGCTTCTCGTCCCCATACCGTGAGTACCTCATCACCAGTTTTTAGCAGCCAGCCTGTGTATGATGAACAGCCATCTTCTGTGGACAAATCTTCTGAGAGGCTGCCTCCAGCTCCCTGGGACACTCAATCTACTGGCATCATTCCACCCCCACCTTCAAAGTATAATCAGAGACAACAATTTTTTGAGCAACAAGGTGCATCCCATTCAAGTAGTGGATCCAATTCCTCTTATGACAGCTTGGTGGGACAAACACAAAATCTCTCGATGAATTCATCCACCCCAACCAAAGAACAAAAGCCAGAAGATGCCCTTTTCAAAGATCTTGTTGATTTTGCAAAATCCAAAACCTCATCATCTTCCAAACCCAATAGGTCATATTGA 1530 0.4444 MANNAAACAERATSDMLIGPDWAINIELCDIINMDPGQAKDALKILKKRLGSKNPKIQLLALFVLETLSKNCGESVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPTGVYPQYHAAYNELKSAGVEFPPRDENSVPFFTPPQTQPIVHAAEEFDDATIQASLQSDASGLSLTEIQNAEGLADVLMEMLSALNPKDHEGVKEEVIVDLVDQCRSYQKRVMLLVNSTTDEQLLGQGLALNDSLQRVLRRHDDIVKGTSDSGAREAETSVLPLVNVNHEDDETEEDFAQLAHRSSRDAHAQNRKPIYDKAEPGRINPVLPPPPASKKPVYSGTGVVDYLSGDTYKTEGSQNSEPASFAAPVHSSPNPTTSSVSASRPHTVSTSSPVFSSQPVYDEQPSSVDKSSERLPPAPWDTQSTGIIPPPPSKYNQRQQFFEQQGASHSSSGSNSSYDSLVGQTQNLSMNSSTPTKEQKPEDALFKDLVDFAKSKTSSSSKPNRSY 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02341 509 SUPERFAMILY GAT-like domain 140 267 - -
Vimu10g02341 509 ProSiteProfiles VHS domain profile. 12 141 IPR002014 GO:0035091|GO:0043130
Vimu10g02341 509 SUPERFAMILY ENTH/VHS domain 4 142 IPR008942 -
Vimu10g02341 509 MobiDBLite consensus disorder prediction 429 481 - -
Vimu10g02341 509 Gene3D - 2 158 IPR008942 -
Vimu10g02341 509 MobiDBLite consensus disorder prediction 495 509 - -
Vimu10g02341 509 MobiDBLite consensus disorder prediction 295 320 - -
Vimu10g02341 509 Pfam VHS domain 9 135 IPR002014 GO:0035091|GO:0043130
Vimu10g02341 509 Gene3D - 175 274 IPR038425 -
Vimu10g02341 509 CDD VHS 10 135 - -
Vimu10g02341 509 FunFam TOM1-like protein 2 4 151 - -
Vimu10g02341 509 CDD GAT_GGA-like_plant 186 264 - -
Vimu10g02341 509 Pfam GAT domain 194 267 IPR004152 GO:0035091|GO:0043130
Vimu10g02341 509 PIRSF TOM1 1 508 IPR014645 -
Vimu10g02341 509 MobiDBLite consensus disorder prediction 288 509 - -
Vimu10g02341 509 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Vimu10g02341 509 SMART VHS_2 5 137 IPR002014 GO:0035091|GO:0043130
Vimu10g02341 509 MobiDBLite consensus disorder prediction 353 408 - -
Vimu10g02341 509 PANTHER TOM1-LIKE PROTEIN 1 505 IPR044836 GO:0035091|GO:0043130|GO:0043328
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02341 Vimu-Chr10 34197538 34204560 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02341 - - gmx:100792343 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02393 1 34639396 34650372 Vimu10g02341 10 34197538 34204560 PCT