Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02373 ATGTGTCACCTGACGCGCAGTGATTTGCTGACGATTTTTGAGAAAGTGGACATGAATGGAGATGGGTTTTTGAGCCTTGAGGAGCTGAAAATGCTGCTAGAGAAGACGGGTTTCAACTACAGTATGGAAGAGTTGGAGTCTCTGGTGGGAAAGAAGAAGCTTGACTTGAGTGAGTTCTTGTTGTTTTATGAATCTATGCTGAAGCAGAAAAATGGGGAAGAAGAAGGGACTCATGAGGGTGAGAATGATGATGATAAGGTTGAGGAGGTGGAGAGGGACCTGGTGAAGACTTTCAAGGTGTTTGATTTGGATGGAGATGGGTTCATCACAAGCCAAGAACTTGAGGGTGTTTTGAAGAGGCTTGGCATGTGGGATGAAAGGTGTGGCAAGGATAGCACATCCATGATTTGCTCCTATGACACTAATTTTGATGGCAAACTTGATTTTCAGGAATTCAAGGACATGATGCTTCTCACAACTTGA 483 0.4389 MCHLTRSDLLTIFEKVDMNGDGFLSLEELKMLLEKTGFNYSMEELESLVGKKKLDLSEFLLFYESMLKQKNGEEEGTHEGENDDDKVEEVERDLVKTFKVFDLDGDGFITSQELEGVLKRLGMWDERCGKDSTSMICSYDTNFDGKLDFQEFKDMMLLTT 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02373 160 SUPERFAMILY EF-hand 7 157 IPR011992 -
Vimu1g02373 160 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Vimu1g02373 160 ProSiteProfiles EF-hand calcium-binding domain profile. 127 160 IPR002048 GO:0005509
Vimu1g02373 160 CDD EFh 93 156 IPR002048 GO:0005509
Vimu1g02373 160 SMART efh_1 8 36 IPR002048 GO:0005509
Vimu1g02373 160 SMART efh_1 93 121 IPR002048 GO:0005509
Vimu1g02373 160 SMART efh_1 131 159 IPR002048 GO:0005509
Vimu1g02373 160 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 63 156 - -
Vimu1g02373 160 ProSitePatterns EF-hand calcium-binding domain. 102 114 IPR018247 -
Vimu1g02373 160 FunFam Probable calcium-binding protein CML44 67 159 - -
Vimu1g02373 160 Gene3D - 1 79 - -
Vimu1g02373 160 Pfam EF hand 139 156 IPR002048 GO:0005509
Vimu1g02373 160 Pfam EF hand 12 32 IPR002048 GO:0005509
Vimu1g02373 160 Pfam EF hand 94 116 IPR002048 GO:0005509
Vimu1g02373 160 Gene3D - 86 159 - -
Vimu1g02373 160 ProSiteProfiles EF-hand calcium-binding domain profile. 89 124 IPR002048 GO:0005509
Vimu1g02373 160 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02373 Vimu-Chr1 34324380 34325268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02373 4 157 EF-hand Containing Proteins AT1G21550 39.355 1.59e-30 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02373 K13448 - gmx:100779760 248.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02373 1 34324380 34325268 Vimu1g02373 1 34324380 34325268 ECH
Vimu1g02373 1 34324380 34325268 Vimu10g02324 10 33920624 33921781 PCT