Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02324 ATGTGTCTGCTAACGCAGTCTGATTTGAAGCGTATTTTTGAGAAAGTGGACGTCAATGGCGATGGGTTGCTGAGCCTTGAGGAGCTGAATCGGATGCTTGAAATCACAGGCAATTGCCAGTACAGCATACAAGAGTTGGAATCGCTCGTGGAAACCAAGAGCCTTGGTTTCAGCGAGTTCTTGTTCTTTTACAACTCCATTTCGGAGCAGCAGAATGGAGAAAGTAGAGGAAGTGGTGAGGCAGAGGAATTGGAGAGCGACCTGGTCAAAACCTTCAAGGTCTTTGACTTGGATGGAGATGGCTTTATCACCAGCCATGAGCTTGAGTCTGTCTTGAAAAGGCTTGGCATGTGGGATGAAACCAATTGCAATGATTCTACAACCATGATTCGATTCTATGACACCAACTTCGATGGTCGTCTTGATTTTCAGGAATTCAAGAATATGATGTTGGTTTCCAGAGCCTGA 468 0.453 MCLLTQSDLKRIFEKVDVNGDGLLSLEELNRMLEITGNCQYSIQELESLVETKSLGFSEFLFFYNSISEQQNGESRGSGEAEELESDLVKTFKVFDLDGDGFITSHELESVLKRLGMWDETNCNDSTTMIRFYDTNFDGRLDFQEFKNMMLVSRA 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02324 155 SMART efh_1 8 36 IPR002048 GO:0005509
Vimu10g02324 155 SMART efh_1 87 115 IPR002048 GO:0005509
Vimu10g02324 155 SMART efh_1 125 153 IPR002048 GO:0005509
Vimu10g02324 155 Gene3D - 76 154 - -
Vimu10g02324 155 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Vimu10g02324 155 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Vimu10g02324 155 Gene3D - 3 75 - -
Vimu10g02324 155 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Vimu10g02324 155 FunFam Calmodulin A 3 153 - -
Vimu10g02324 155 SUPERFAMILY EF-hand 7 151 IPR011992 -
Vimu10g02324 155 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 72 150 - -
Vimu10g02324 155 Pfam EF hand 8 34 IPR002048 GO:0005509
Vimu10g02324 155 ProSiteProfiles EF-hand calcium-binding domain profile. 121 155 IPR002048 GO:0005509
Vimu10g02324 155 Pfam EF-hand domain pair 87 150 IPR002048 GO:0005509
Vimu10g02324 155 CDD EFh 87 150 IPR002048 GO:0005509
Vimu10g02324 155 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02324 Vimu-Chr10 33920624 33921781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02324 4 151 EF-hand Containing Proteins AT1G21550 39.865 8.60e-33 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02324 K13448 - gmx:100527117 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02324 10 33920624 33921781 Vimu10g02324 10 33920624 33921781 ECH
Vimu1g02373 1 34324380 34325268 Vimu10g02324 10 33920624 33921781 PCT