Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02316 ATGGTAGCATGCATCGACATGGCATTCTCGGCGGACATGGCCGCGGCTCTGTCACCTTCGTATCATTGTTTCTTCAAGCCTCCTCCGTCGTTCTTGGGCCTGGGCCTGGGCCTGGAGTTTCAGAGGAAGGGAAGAAAGCTCCGTAGACACTTCAACTTGGTCATCAGCGCCCAACTTTCCAACTCCTTTTCCTTCAGCTTCGGTCTCGACTCTCCGAATTTGAATTCCTTCCAATCCAATGATACATCACGGTTGTCTTGGATGGGTCCAGTTCCAGGTGATATTGCTGAAGTTGAGGCGTTTTGTAGGATCTTTAGGAATTCAGAAAGGCTTCATTCTGCATTAATGGATGCATTATGTAACCCATTGACTGGTGAGTGTAGTGTTTCATATGAGGTCCCATCAGATGAGAAACCTCAACTAGAAGATAAAATAGTTTCTGTTCTTGGATGCATGGTATCCCTTGTGAACAAAGGAAGGGAGGATATTCTTTCTGGAAGATCCTCAATTATGAATTCCTTTCGTGCTGCAGATGTCAGCACAACAGATGATAAGCTCCCCCCACTAGCCCTTTTTAGGAGTGAGATGAAAAGGTGCTGTGAGAGCTTGCATGTAGCTCTCGAAAACTATTTAGAACTTGATGATGATCGAAGCTTAAATGTATGGAGGAAACTTCAAAGACTGAAGAATGTCTGCTATGATTCTGGTTTTCCTCGTGGGGAGGGTTTTCCTTGTCACATGCTATTTTCAAATTGGAATCCTGTATATTTATCTGCTTCTAAAGAGGACATGGAAACCAAAGACACAGAAGCAGTCTTTTGCACTGGTGGTCAGGTAACAGAAGAAGGCCTGAAGTGGTTACTGGATAAAGGATATAAAACCATCATAGATCTTAGAGCAGAGACTGTGAAAGACAACTTCTATCAAGCAGCTTTACATGATGCCATTTCATCTGGAAGAATTGAATTGGTTAAAATCCCAGTTGAAGCTAGGACTGCACCTACAATGGAGCAGGTTGTGAGGTTTGCATCTTATGTTTTAAATGGCAGCAAAAGGCCTATCTATCTTCACAGCAAGGAAGGAGTTTTAAGAACATCTGCCATGGTCTCCCGATGGAGGCAGTACATGACTCGATCTTCATCACATATTGTTTCTAATCCACCAGTTACACCCTATGACATGTTATCACGTTATACAAATGGGTCTGCTAGACTTCTGGATTCTTCAATAACTGCAGAGAGATCCTCCCAGGAAAAAGATTTCAATTCATTGCCCGAGAATTTGAACTCAACACGTAGTTCTGTTGGTGCATTTGACAAAAGCACCTCTCAAAAGAAGTACAACGGTGAAGCACAAGGTACTACAGTCTTGAGTGAAGTTTCTACTGATAACAGGGAATTATCAGAAGCAACTGCTGCTAATGAGGAAGGATCTTTTCCAATTGACTTCAGCAAAATTAACCCTTTAAAATCTCAACTTCCTCCTTGTGATATCTTTTCCAAAAGAGAGATGTCAAAATTTTTGGGAAGCCGGAAGATCTCACCGCCCTCTTATGTCAATTATCAGAGTAGAAGGTTGGAAGGCTCTCTGCAACAGAGGAACATGAATATAACAAAACAACAGGGAGGTGTGGGTGTCAGCAGTAGTGATAATCCCATACCTAAAATAGTAGGTCCAGAAAGTTCAAATGGATCAGCCCATCTGGACTATCCATCTAGAAAGTCCCAGATTACAGTTGATGGCAATAGGAAGTTAGGGAACAGGAGTACTTCTAGTTCTGTTAGGACAACAGTAAATGGATTTAGTGACCATGAATACATGACTAATGGCAATGGTTCCAACACTGTGAAGAATAATTTTGATAATGTCGCAGCTAACTCTCAAAGGATTGAAGATCATATGGTTAAAGATAGGTTAGCCTTAAATGATGATGAATTGGGATCCATCGAAGGAGATATGTGTGCTTCTTCAACAGGAGTTGTAAGAGTGCAATCAAGAAAGAAGGCTGAGATGTTCCTAGTTCGAACAGATGGATTTTCTTGTACCAGAGAAAAAGTGACCGAATCTTCTTTGGCTTTCACTCATCCTAGCACCCAGCAGCAAATGCTTATGTGGAAGTCTATGCCGAAGAATGTATTATTGTTAAAAAAGCTTGGAGATGAACTAATGGAAGAAGCAAAAATGGTAAGGATTTTCTTAGACTGCAGAAAGCATGAAAGTGGTTCAAAGAAATGA 2235 0.4157 MVACIDMAFSADMAAALSPSYHCFFKPPPSFLGLGLGLEFQRKGRKLRRHFNLVISAQLSNSFSFSFGLDSPNLNSFQSNDTSRLSWMGPVPGDIAEVEAFCRIFRNSERLHSALMDALCNPLTGECSVSYEVPSDEKPQLEDKIVSVLGCMVSLVNKGREDILSGRSSIMNSFRAADVSTTDDKLPPLALFRSEMKRCCESLHVALENYLELDDDRSLNVWRKLQRLKNVCYDSGFPRGEGFPCHMLFSNWNPVYLSASKEDMETKDTEAVFCTGGQVTEEGLKWLLDKGYKTIIDLRAETVKDNFYQAALHDAISSGRIELVKIPVEARTAPTMEQVVRFASYVLNGSKRPIYLHSKEGVLRTSAMVSRWRQYMTRSSSHIVSNPPVTPYDMLSRYTNGSARLLDSSITAERSSQEKDFNSLPENLNSTRSSVGAFDKSTSQKKYNGEAQGTTVLSEVSTDNRELSEATAANEEGSFPIDFSKINPLKSQLPPCDIFSKREMSKFLGSRKISPPSYVNYQSRRLEGSLQQRNMNITKQQGGVGVSSSDNPIPKIVGPESSNGSAHLDYPSRKSQITVDGNRKLGNRSTSSSVRTTVNGFSDHEYMTNGNGSNTVKNNFDNVAANSQRIEDHMVKDRLALNDDELGSIEGDMCASSTGVVRVQSRKKAEMFLVRTDGFSCTREKVTESSLAFTHPSTQQQMLMWKSMPKNVLLLKKLGDELMEEAKMVRIFLDCRKHESGSKK 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02316 744 Gene3D Protein tyrosine phosphatase superfamily 264 397 IPR029021 -
Vimu1g02316 744 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 273 378 IPR029021 -
Vimu1g02316 744 MobiDBLite consensus disorder prediction 414 435 - -
Vimu1g02316 744 FunFam NAD kinase 2 chloroplastic 265 399 - -
Vimu1g02316 744 PANTHER NAD KINASE 266 734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02316 Vimu-Chr1 33676204 33680042 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02316 K00858 - gmx:100782844 1204.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02316 1 33676204 33680042 Vimu1g02316 1 33676204 33680042 ECH
Vimu1g02316 1 33676204 33680042 Vimu10g02313 10 33771935 33781788 PCT