Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02307 ATGTTTGAACAAGGTGTAAGCAGAAGTTATCGAGAGGCATTTGAAGCCTCCAATGGCAGGATTCAATTAGCAGATTCCAAGTTCTTTGATGATGATGGGCGTCCCAAAAGAACTGGTAATCAAATATCCTCAAGAGTCCAAGAACTATGTGGACTGCGAGTGCTGATAACAGCTGTTATTGGGTCTGGGGTGCTGTCTATGGCCTGGGCTATTGCTCAGCTTGGTTGGATTGCTGCTCCTGCTTCATTGATTCTGTTCTCTGTGGTGACTTATTACACCTCCGCTCTTCTAGCTGCTTGTTACCGTACTGGAGACCAAATCACCCGCAATAGAAACTACACTTACATGCACGCTGTTAAATCACACCTAGGTCGTATGAATGCAAAGTTGTGTGGATGGGTTCAGTATGCGAACCTTTTCGGAGTGGCAATCGGGTACACCATAGCAGCTTCCATAAGCATGATGTCTAACTGCTATCATAATAGCGGAGGAAAAGATCCATGTAAAATGAACAGCAATGTTTACATGATTTCATTTGGAATTGCGGAAATTATTTTATCCCAAATTCCAGATTTTAACGAATTGTGGTGGCTCTCTATTGTGGCTGCTGTCATGTCTTTCACATACTCTATAATTGGACTTGGTCTTGGAATGGCTAAAGTTATACAAAATGGAATGGTTAAAGGAAGCTTAACTGGTGTAAGTATTGGTGCTGTCTCAGAAACCCAAAAAATTTGGAGGACCTTCCAAGCTCTCGGTAACATAGCCTTTGCCTACTCCTACTCAATGATCCTTATAGAAATTCAGGACACAATCAAATCACCTCCTGAAGAGTCAAAGACAATGTCTAAGGCTACTTTAGTGAGTGTATTGGTGACAAGCATTTTCTATCTGCTATGTGGTGGTTTTGGTTATGCAGCTTTTGGAGATTCAAGCCCTAGAAACCTGCTAACTGGTTTTGGCTTTTATAACCCATATTGGCTCCTCGACATAGCCAATGTTGCCATTGTTGTCCACCTTGTTGGTGCATACCAAGTTGACTGCCAACCACCGTTCCGATTTATCGAAAAAGTCGCAGCACAAAAATTCCCAGACAGTGATTTTATAACGAAGGAGTTTGTAGTACGAATTCCTGGTTGCAAACCTTTTCAGATTGGTTTGGAGGACAATTTTTCAATGTTGCTACCATTCTTCACTGACATTGTGGGGCTTATTGGTGCCATTGCATATTGGCCACTGACCGTGTATTTCCCAGTGGAGATGTACATAGTTCAAACTAAAATACCAAAATGGATATGCCTGCAGATGCTTAGTGGTTCATGCTTCGTCTTGGCAATGGTAGCTGCAGTAGGTTCCATTGCTGGAGTTCTTGATGGTCTTAAAGTTTACAAGCCATTCATGACCGATTACTAG 1413 0.4218 MFEQGVSRSYREAFEASNGRIQLADSKFFDDDGRPKRTGNQISSRVQELCGLRVLITAVIGSGVLSMAWAIAQLGWIAAPASLILFSVVTYYTSALLAACYRTGDQITRNRNYTYMHAVKSHLGRMNAKLCGWVQYANLFGVAIGYTIAASISMMSNCYHNSGGKDPCKMNSNVYMISFGIAEIILSQIPDFNELWWLSIVAAVMSFTYSIIGLGLGMAKVIQNGMVKGSLTGVSIGAVSETQKIWRTFQALGNIAFAYSYSMILIEIQDTIKSPPEESKTMSKATLVSVLVTSIFYLLCGGFGYAAFGDSSPRNLLTGFGFYNPYWLLDIANVAIVVHLVGAYQVDCQPPFRFIEKVAAQKFPDSDFITKEFVVRIPGCKPFQIGLEDNFSMLLPFFTDIVGLIGAIAYWPLTVYFPVEMYIVQTKIPKWICLQMLSGSCFVLAMVAAVGSIAGVLDGLKVYKPFMTDY 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02307 470 Pfam Transmembrane amino acid transporter protein 54 456 IPR013057 -
Vimu1g02307 470 PANTHER OS05G0424000 PROTEIN-RELATED 55 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02307 Vimu-Chr1 33575679 33577688 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02307 27 470 Organic Solute Cotransporters AT5G09220 64.946 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02307 K24917 - gmx:100796082 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02307 1 33575679 33577688 Vimu1g02307 1 33575679 33577688 ECH
Vimu1g02307 1 33575679 33577688 Vimu10g02296 10 33587929 33590392 PCT