Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02296 ATGGTTGGCATGGATGGCCATGGCAGCAGGCATGATCAGCAAACATTTAACGTCTCCATTGACATGCATCAACAAGGAGACTCTAAGTGTTTCGACGATGATGGTCGCCCTAAACGAACAGGAACAGTGTGGACTGCGAGTGCACACATAATAACCGCAGTGATAGGATCTGGAGTTCTATCTTTGGCTTGGGCTATAGCTCAGCTTGGATGGATTGCTGGTCCTGCTGTTATGCTTCTTTTTTCTGCCATCACTTACTTCACTTCCCTTCTTCTCACTGATTGTTATCGTACCGGTGACCCTCTCACTGGCAAGAGAAACTACACTTACATGGATGCTATTCGTTCTAACTTTGGTGGCAACGGCTTTAAGGTCAAGATGTGTGGACTGGTTCAGTATGTTAACCTTTTTGGAATCTCCATTGGTTACACTATAGCGTCTTCCATTAGCATGATGGCAATCGAAAGATCTAATTGTTTCCACAAGAGCGGAGGGAAGAATCCATGTCATATGAACAGCAACGTTTACATGATTTCGTTTGGAATATTGGAGATTATTTTCTCTCAAATTCCAGGCTTCGATCAATTATGGTGGCTGTCTTTTGTAGCTGCTGTCATGTCATTCACATACTCCACCATTGGGCTAGGCCTTGGTATTGGAAAGGTCATTGAGAACAGAAAAGTGGGGGGAAGCTTAACCGGGATAACCGTTGGTTATGTGACTCAAACTAATAAAGTTTGGAGAACCATGCAAGCGCTTGGTGACATAGCATTTGCCTATTCATATTCCTTCGTCCTTATAGAAATTCAGGACACGGTGAAATCACCTCCATCGGCATCAAAAACAATGAAGAAGGCCTCTTTGGTCGGTGTTGCAGTCACCACCTTTTTCTACATGCTTTGTGGCTGCTTTGGGTATGCTGCTTTTGGAGACTCAAGCCCTGGAAACCTTCTCACTGGTTTTGGCTTCTACAACCCATACTGGCTCCTTGACATTGCCAATGCTGCCATTGTGATCCACCTTGTTGGTTCATACCAAGTCTACAGCCAGCCCCTCTTCGCTTTCATTGAGAAAAACGTAGCACAGAGATTCCCAGATAGTGATTTTGTGAACAAAGACATTGAAATCTCAGTCCCTGGTTTCCATTCCTACAAGCTCAACCTCTTCAGATTGGTTTGGAGGACAACATATGTTGTGGTAAGCACTTTAATAGCAATGCTGCTCCCATTCTTCAATGACGTAGGAGCGCTTATTGGAGCATTTGGATTTTGGCCCCTTACTGTGTATTTCCCAGTGGAAATGTATATTACTCAGAAGAGAATACCAAAGTGGAGCTCTAAATGGATCTGCCTCCAAACACTAAGCATTGCTTGCCTTTTGATGACCATAGGAGCTGGAGTTGGCTCTATTGCTGGGATTCTGATTGATCTTAAGACTTACAAGCCTTTCAAGACAAACTATTGA 1464 0.4385 MVGMDGHGSRHDQQTFNVSIDMHQQGDSKCFDDDGRPKRTGTVWTASAHIITAVIGSGVLSLAWAIAQLGWIAGPAVMLLFSAITYFTSLLLTDCYRTGDPLTGKRNYTYMDAIRSNFGGNGFKVKMCGLVQYVNLFGISIGYTIASSISMMAIERSNCFHKSGGKNPCHMNSNVYMISFGILEIIFSQIPGFDQLWWLSFVAAVMSFTYSTIGLGLGIGKVIENRKVGGSLTGITVGYVTQTNKVWRTMQALGDIAFAYSYSFVLIEIQDTVKSPPSASKTMKKASLVGVAVTTFFYMLCGCFGYAAFGDSSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGSYQVYSQPLFAFIEKNVAQRFPDSDFVNKDIEISVPGFHSYKLNLFRLVWRTTYVVVSTLIAMLLPFFNDVGALIGAFGFWPLTVYFPVEMYITQKRIPKWSSKWICLQTLSIACLLMTIGAGVGSIAGILIDLKTYKPFKTNY 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02296 487 Pfam Transmembrane amino acid transporter protein 39 474 IPR013057 -
Vimu10g02296 487 PANTHER OS05G0424000 PROTEIN-RELATED 41 470 - -
Vimu10g02296 487 FunFam Amino acid permease 6 36 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02296 Vimu-Chr10 33587929 33590392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02296 11 487 Organic Solute Cotransporters AT1G77380 72.956 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02296 K24917 - gmx:100779910 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02296 10 33587929 33590392 Vimu10g02296 10 33587929 33590392 ECH
Vimu1g02307 1 33575679 33577688 Vimu10g02296 10 33587929 33590392 PCT