Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02298 ATGCCACCTTCTCCTTCCTTCCCTTCAGAGAACCGAACCAAATGGCGGAGGAAGAGGAAGCCAGAATCCCACAAACGCCACTCCAAACGTCATGACGAAGATGACGAAGACAACGATTCCGATGATGACCACAACGACTCCGACGACCAGTTCCGCAGCCCTAACACGCCGCCCAACACCGACTCACGTGTCGAGATCGAGGTCGTCTCTCGCGATGGAGTCCAGATTTCTCGCTTCCCACCGGCGATCAGGCGCACTGTTACCCGTCCTCATGCTGCGGTCACGGCTATTGTGGCTCTGGAGTTCGGCAGGGGGCACTCGCAGCACGGTGTTCCGGTTCTCGAGAATGTGTCTCACGGCCAGCTTCAGGCGTCCTCGACTGTGACTGCGGATTGTCTTGGGGGCTCGAGCTTTGTCGTGGCTCCTCCTCCACTTATGAAAGGCTCCGGCGTTGTTAAGCGTTTTGGCACTAGGGTTCTAGTGGTTCCTATGCATTCAGATTGGTTTTCTCCAGCCTCAGTGCATCGACTTGAGAGACAAGCAGTGCCACATTTCTTCTCTGGAAAGTCACCAGATCATACGCCGGAGAAGTACATGGAATGTAGGAATTACATTGTTGCAAGATACATGGAGGACCCAGGAAAGAGGATTACAGTCCCTAGTTGCCAGGTTTTGTCTGTTGGTGTTGGTATTGAAGATTTAACTCGAATTGTAAGGTTCCTTGATCAATGGGGAATTATCAATTACTGTGCTCAGGAGCCAAGACATGAGTATATGGACAATGATTCTTGCCTGACGGAGGACACTAGTGGTGCACTATGTGTGCCGTCAGTGACTTTAAGATCCATAGATAGTTTGATTGAGTTTGACAAGCCCAAGTGTAAATTCAAAGCAGATGAAATTTATTCATGTCGAACAATGCACAATACGAATATTTCTGATTTGGATGACACAATAAGAGAGTATCTATCTGAAAACTATTGCCACTATTGTTCTCGTTCTCTTCCTGTTGTATACTACCAATCACAGAAAGAGGTTGATATTTTACTCTGCACTGATTGCTTTCACGATGGGAGATTTGTTGCTGGTCATTCTAGTATAGATTTTATTACAGTGGATTCAACTACAGATTATGGTGATCTAGATGGGGATAGTTGGACTGATCAAGAGACTTTATTGCTGCTTGAAGCAATGGAGATTTACAATGAGAATTGGAATGAAATTGCTGAGCATGTTGGTACCAAGTCGAAAGCACAATGCATTCTTCATTTTCTCCGTCTACCTGTAGAAGATGGAAAATTAGAAAACATCAATGTATCGAGTATTTCCTTGTCATCCAGTATGAATAATCAAGAGGGTAATGGAAGATTGCATTGTTGCTCAAATGGGGATTCAGCAGGACCCATACATAACAACCAAGATTCTGATGACAGGCTTCCTTTTGCAAATTCTGGAAATCCAGTTATGGCACTGGTTGCGTTTTTAGCCTCTGCTGTTGGACCAAGAGTAGCTGCAACTTGTGCTCACGCAGCATTAGCTGCATTGTCAGAGAATAATTCAGGGAGCGCGTCAGATATAGAAGCTCTGGAAAATGATAACAGGGCAAATTCAGAAAGCATAAATAATAGAAATGGTGGACATCATGGAATGGTTGCAAACTCGAATCAGAAAAATGAGGACAAGTTAAAAGTACCTGGTTCATGTGCTCAAGATGATGCTGGGTCGACCCTGCTGTCTGCTGAGAAAGTCAAAGATGCTGCCAAAGCGGGCCTCTCCGCTGCAGCAATGAAAGCTAAATTGTTTGCTGATCATGAAGAGCGAGAAATTCAGAGGCTATGTGCTAATATTGTTAATACTAAGTTGAAAAGATTGGAACTGAAGCTGAAGCAGTTTGCAGAAATTGAAACACAGTTGATGAAGGAATGTGAACAAGTTGAGAAGCTGAGGCTGAGGTTTGCTTCTGAACGGTCCCATGTTGTTTCAGCACGTCTTGGAAATGGTGGAACCACTCCTCCAATGAATGTATCATGTGTTGGCCCTTCCATGATTAATAATAATAGCAACAGTAGGCAGCAAATGATTTCTGCTTCTTCCTCACAGCCTAGCATCTCAGGGTATGGCAACAGCCAACCAGTTCATCCACACATGTCCTTTGTCCCACGGCCTTCAATGTTTGGATTAGGGCAAAGGTTGCCCCTATCTATGATACAACAATCACAGGCTGTTTCTTCAAATTCGATGTTCAATGGCCCCAGTAATCTGCAGCCTGCTCCTAATCATTCGTTGTCGAGGGCTGTGTCAAGAACTAACTCTGGTTTAGGTTAA 2325 0.4495 MPPSPSFPSENRTKWRRKRKPESHKRHSKRHDEDDEDNDSDDDHNDSDDQFRSPNTPPNTDSRVEIEVVSRDGVQISRFPPAIRRTVTRPHAAVTAIVALEFGRGHSQHGVPVLENVSHGQLQASSTVTADCLGGSSFVVAPPPLMKGSGVVKRFGTRVLVVPMHSDWFSPASVHRLERQAVPHFFSGKSPDHTPEKYMECRNYIVARYMEDPGKRITVPSCQVLSVGVGIEDLTRIVRFLDQWGIINYCAQEPRHEYMDNDSCLTEDTSGALCVPSVTLRSIDSLIEFDKPKCKFKADEIYSCRTMHNTNISDLDDTIREYLSENYCHYCSRSLPVVYYQSQKEVDILLCTDCFHDGRFVAGHSSIDFITVDSTTDYGDLDGDSWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPVEDGKLENINVSSISLSSSMNNQEGNGRLHCCSNGDSAGPIHNNQDSDDRLPFANSGNPVMALVAFLASAVGPRVAATCAHAALAALSENNSGSASDIEALENDNRANSESINNRNGGHHGMVANSNQKNEDKLKVPGSCAQDDAGSTLLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIVNTKLKRLELKLKQFAEIETQLMKECEQVEKLRLRFASERSHVVSARLGNGGTTPPMNVSCVGPSMINNNSNSRQQMISASSSQPSISGYGNSQPVHPHMSFVPRPSMFGLGQRLPLSMIQQSQAVSSNSMFNGPSNLQPAPNHSLSRAVSRTNSGLG 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02298 774 SUPERFAMILY Homeodomain-like 159 256 IPR009057 -
Vimu1g02298 774 ProSiteProfiles Zinc finger ZZ-type profile. 323 377 IPR000433 GO:0008270
Vimu1g02298 774 CDD SANT 385 427 IPR001005 -
Vimu1g02298 774 MobiDBLite consensus disorder prediction 1 64 - -
Vimu1g02298 774 Coils Coil 621 641 - -
Vimu1g02298 774 ProSiteProfiles Myb-like domain profile. 378 428 IPR001005 -
Vimu1g02298 774 SMART sant 382 430 IPR001005 -
Vimu1g02298 774 Pfam Myb-like DNA-binding domain 385 427 IPR001005 -
Vimu1g02298 774 ProSiteProfiles SWIRM domain profile. 160 258 IPR007526 GO:0005515
Vimu1g02298 774 FunFam SWI/SNF complex subunit SMARCC2 isoform C 382 432 - -
Vimu1g02298 774 Gene3D - 166 253 IPR036388 -
Vimu1g02298 774 ProSiteProfiles SANT domain profile. 381 432 IPR017884 -
Vimu1g02298 774 Pfam SWIRM-associated region 1 589 662 IPR032451 -
Vimu1g02298 774 Gene3D - 382 432 - -
Vimu1g02298 774 PANTHER SWI/SNF COMPLEX-RELATED 65 663 - -
Vimu1g02298 774 FunFam SWI/SNF complex subunit SMARCC2 isoform c 166 254 - -
Vimu1g02298 774 Pfam SWIRM domain 163 249 IPR007526 GO:0005515
Vimu1g02298 774 SUPERFAMILY Homeodomain-like 383 436 IPR009057 -
Vimu1g02298 774 Coils Coil 512 532 - -
Vimu1g02298 774 MobiDBLite consensus disorder prediction 742 774 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02298 Vimu-Chr1 33488657 33493773 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02298 328 424 EF-hand Containing Proteins AT3G07740 32.075 1.31e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02298 K11649 - gmx:732600 1233.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02298 1 33488657 33493773 Vimu1g02298 1 33488657 33493773 ECH
Vimu1g02298 1 33488657 33493773 Vimu10g02286 10 33467146 33473549 PCT