Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02286 GTAGAGAAAGAGAAGGAGAGATCGATCCTCCAAATCAAAGATATTTCTTCCAACGACAATCCCAATCCTTTGCGCCAATCAACGACCCCACACTCAAATCTTTCCCACAATTTTCTCTCTCTTTCTCTCTCCCTTAAACCCCTCTCTTCTCCTCTTGCCATGCCAGCTTCTCCTTCAGAAAACCGAACCAGATGGAGGAAGCGCAAGAGAGATTCTCAAGTCTCTCGGCGCCATCCCAAGCACGAAGAGGAGGAGGAAGACGACGAAGAAAACCCCAATGCAGAGGATGACCATGCGGAACGTGAGTACGATTCTGAAGAACAAACGCATCAAAACCAAAACCACCCTAATTCTCAACCACACGTGGAGACGGAGGTTCTCTCAGACCACGGTGTTACCATTTCTCAGTTTCCGGTGGTGATAAGGCGTTCCGTCAATCGTCCTCACTCTTCCGTCACTGCAATTGTGGCTCTGGAGCGAGCCCTTGAGTCTGGAGACAACAAGGCTCAGAGTGCTCTTGCTCCTCTTGTTATTGAAAACGTGTCTCACGGTCAGCTTCAAGCGCTGTCGGCTGTGCCATCTGATAATTTGGCTTTTGAGGGTGATTCCTCTTTTGTTATAAGTCCGCCTGCCATATTGGAAGGTCGCGGGGTTGTTAAGCGCTTTGGAACTAAGGTTCTTGTAGTTCCTATGCATTCAGATTGGTTTTCGCCTGCCACGGTGCATAGGTTAGAGAGGCAAGCAGTGCCACATTTCTTTTCAGGGAAGTCACCCGATCATACTCCCCAGAAGTACATGGAGTGTAGGAACTGCATTGTTGCTATGCATTTGGAGGAGCCTGGGAAGAGGATTACGGTTTCTGATTGCCAGGGTTTGTTGACAGGAGTTGATTTTGAAGATTTGACTCGGATTGTGAGGTTCCTTGATCATTGGGGAATTATTAATTACTGTGTTCAGACATCGAGTCTTGAGTCTCCCAATGTTATGTCTTGCCTGAGGGAGGAACTGAGTGGAGAGGTCCGTGTGCCGGCTGAGGCTTTGAAATCTATTGATAGTTTGATCAAATTTGACAATCCGAGTTGTAAGCTGAAAGCTGACGAAATTTATTCGTCATTGACTGCACGTAATGTGGATGTCTTTGATCTGGAGGACAGAATAAGAGAACATCTTTCCGAGAATCATTGCAATTATTGTTCTCGTCCTCTTCCTGTTGTATACTACCAGTCTCAGAAAGAGGTTGATATTATACTTTGCATTGATTGCTTTCATGATGGGAGATTTGTCATTGGTCATTCAAGTCTAGATTTTCTAAGGGTGGATTCGACAAGGGATTATGGTGAACTAGATGGGGATAATTGGACTGATCAAGAAACTTTACTGCTTCTTGAAGCAATGGAGATTTACAATGAGAATTGGAATGAAATTGCTGAGCATGTTGGTACCAAATCAAAAGCACAATGCATTCTTCATTTTCTTCGTCTACCCATGGAAGATGGAAAGTTGGAAAATATTAATGTTCCGAGCATGTCTTTGTCATCCAATGCAATGGATAGAGATGGTAGTGGAAGACTGCATTGTTACTCAAACGGAGATACTGCAGGACCTGTCCATCAAGTGAGAGATTCTGACAGCCGGCTTCCTTTTGCAAATTCTGGAAATCCTGTTATGGCTTTGGTTGCCTTTTTAGCCTCTGCAGTTGGACCAAGAGTAGCTGCTTCTTGTGCTCATGCAGCATTAGCAGTATTGTCAGTGGATAATTCTGGCAGTACTTCACAGGTGGAAGCACCTGGACATGATAATAGGACAAATTCCGAAAGTATACGATGTCGAGATGGTGGGTCTCATGGAGAAACAGCGGTATCAAATAATAATAATAATGAGGATAAGGCTAAGGTACATGGCTCATGGGGACTAAATGATGGTAGGACAACCCCACTATCTGCTGAGAAAGTTAAAGATGCTGCTAAAGCAGGCCTCTCTGCAGCAGCAATGAAAGCAAAATTATTTGCCGATCATGAAGAGCGAGAAATTCAGAGGTTGTGTGCTAACATAGTTAATCATCAGCTGAAAAGATTAGAGTTGAAGCTGAAACAGTTTGCGGAAATCGAAACATTGTTAATGAAAGAATGCGAACAACTGGAGAGAACCAAGCAAAGGTTTGCTGCTGAACGGTCTCGTGTAATATCAGCACGTCTTGGAACTGCAGGAGCCACACCCACAATGGCTGCATCGGGTGTTGGTCCTTCAATGGCTAGCAATGGCAGCAACAGGCAACAAATGATCTCTGCCTCTCCCTCACAGCCCAGCATCTCAGGGTATGGCAGCAATCAATCACTTCATCCACATATGTCCTTTGCCCCACGACCTTCGATGTTTGGGTTGGGGCAAAGATTACCGCTATCTATGATACAACAATCACAATCACCTTCTTCAACTGCCATGTTCAATGCCCCTAGTAATGTGCAGCCCACGTCCAATCATCCATTGTTGAGGCCTGTATCAGGAACAAACTCTGGTTTAGGTTAA 2526 0.4489 VEKEKERSILQIKDISSNDNPNPLRQSTTPHSNLSHNFLSLSLSLKPLSSPLAMPASPSENRTRWRKRKRDSQVSRRHPKHEEEEEDDEENPNAEDDHAEREYDSEEQTHQNQNHPNSQPHVETEVLSDHGVTISQFPVVIRRSVNRPHSSVTAIVALERALESGDNKAQSALAPLVIENVSHGQLQALSAVPSDNLAFEGDSSFVISPPAILEGRGVVKRFGTKVLVVPMHSDWFSPATVHRLERQAVPHFFSGKSPDHTPQKYMECRNCIVAMHLEEPGKRITVSDCQGLLTGVDFEDLTRIVRFLDHWGIINYCVQTSSLESPNVMSCLREELSGEVRVPAEALKSIDSLIKFDNPSCKLKADEIYSSLTARNVDVFDLEDRIREHLSENHCNYCSRPLPVVYYQSQKEVDIILCIDCFHDGRFVIGHSSLDFLRVDSTRDYGELDGDNWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVPSMSLSSNAMDRDGSGRLHCYSNGDTAGPVHQVRDSDSRLPFANSGNPVMALVAFLASAVGPRVAASCAHAALAVLSVDNSGSTSQVEAPGHDNRTNSESIRCRDGGSHGETAVSNNNNNEDKAKVHGSWGLNDGRTTPLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIVNHQLKRLELKLKQFAEIETLLMKECEQLERTKQRFAAERSRVISARLGTAGATPTMAASGVGPSMASNGSNRQQMISASPSQPSISGYGSNQSLHPHMSFAPRPSMFGLGQRLPLSMIQQSQSPSSTAMFNAPSNVQPTSNHPLLRPVSGTNSGLG 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02286 841 ProSiteProfiles SWIRM domain profile. 227 325 IPR007526 GO:0005515
Vimu10g02286 841 PANTHER SWI/SNF COMPLEX-RELATED 114 728 - -
Vimu10g02286 841 MobiDBLite consensus disorder prediction 616 630 - -
Vimu10g02286 841 FunFam SWI/SNF complex subunit SMARCC2 isoform c 233 321 - -
Vimu10g02286 841 Pfam SWIRM domain 230 316 IPR007526 GO:0005515
Vimu10g02286 841 Pfam SWIRM-associated region 1 657 734 IPR032451 -
Vimu10g02286 841 SUPERFAMILY Homeodomain-like 226 326 IPR009057 -
Vimu10g02286 841 MobiDBLite consensus disorder prediction 745 770 - -
Vimu10g02286 841 Coils Coil 670 690 - -
Vimu10g02286 841 ProSiteProfiles Myb-like domain profile. 445 495 IPR001005 -
Vimu10g02286 841 MobiDBLite consensus disorder prediction 738 770 - -
Vimu10g02286 841 ProSiteProfiles Zinc finger ZZ-type profile. 390 444 IPR000433 GO:0008270
Vimu10g02286 841 MobiDBLite consensus disorder prediction 48 121 - -
Vimu10g02286 841 Pfam Myb-like DNA-binding domain 452 494 IPR001005 -
Vimu10g02286 841 Gene3D - 233 320 IPR036388 -
Vimu10g02286 841 CDD SANT 452 494 IPR001005 -
Vimu10g02286 841 FunFam SWI/SNF complex subunit SMARCC2 isoform C 449 499 - -
Vimu10g02286 841 SMART sant 449 497 IPR001005 -
Vimu10g02286 841 MobiDBLite consensus disorder prediction 587 643 - -
Vimu10g02286 841 Gene3D - 449 499 - -
Vimu10g02286 841 MobiDBLite consensus disorder prediction 13 35 - -
Vimu10g02286 841 ProSiteProfiles SANT domain profile. 448 499 IPR017884 -
Vimu10g02286 841 MobiDBLite consensus disorder prediction 1 35 - -
Vimu10g02286 841 MobiDBLite consensus disorder prediction 803 841 - -
Vimu10g02286 841 SUPERFAMILY Homeodomain-like 450 503 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02286 Vimu-Chr10 33467146 33473549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02286 395 491 EF-hand Containing Proteins AT3G07740 33.962 3.82e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02286 K11649 - gmx:100780440 1386.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02286 10 33467146 33473549 Vimu10g02286 10 33467146 33473549 ECH
Vimu1g02298 1 33488657 33493773 Vimu10g02286 10 33467146 33473549 PCT