Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02283 ATGGATTTTAGAAGAAAAGGAATAACATGGCACACGCTTTTCGTATTATTTCTTCTATTTTCTGCCATTTTCCCACTCTCTTTCTCAGCAGCCAATCAACCCCACAAAGCCAAGAACCTCGCCACCCATCGCCTTTCCTCCTCAGCTGTTTTCAAAGTTCAAGGAAATGTGTACCCTCTTGGGCATTACACAGTGACTCTCAACATTGGCTATCCGGCCAAGCCTTACGACCTTGACATAGACTCGGGTAGTGACATCACTTGGGTTCAATGTGATGCACCATGTAAAGGTTGCACCAAGCCTCGTGACCAACTTTATAAACCCAATCACAACCTTGTGCAATGTGCGGAACAATTGTGTTCTGAAGTGCACTTACCAACAGACCATAATTGTGCTTCCCCAGATGACCAATGTGACTATGAAGTTGAGTATGCAGATAATGGATCATCTCTGGGTGTGCTTGTCCGGGACTACATTAATTTTCAATTCACCAATGGCTCTGTGGTGCGCCCTAAGATAGCCTTTGGGTGCGGATATGATCAAAAGTATTCTGGTTCTACCTCCCCACCTTCTACAGCAGGAGTCATTGGCCTTGGCAATGGCAGAGCAAGCATTTTAACTCAACTTCATTCTTTGGGTCTGATACGCAATGTAGTTGGACACTGCCTAAGTTCAAGAGGAGGAGGGTTTTTATTCTTTGGAGATTGTCCCGTTCCCACTTCAGGAATTTTTTGGACAACCATGCTGCATACTTCTTCGGACTCAGGACCAGCAGAGCTGTTGTTCAACGGTAAAGCTACGAAAGTTAAGGGTCTTCAACTTATCTTCGATAGCGGGAGCTCTTACACATACTTCAACTCCCTGGCGTATCAAGCTGTTGTAAATCTGGTGTCGGATGATTTAAAGGGGAAACAGTTGACAAGAGCAACCGATGATCCATCACTTCCAATTTGTTGGAAGGGTCCAAAATATTTCAAATCGTTAAATGATGTCAAGAAATACTTCAAACCCCTAGCATTTAGCTTCACAAAAACTAAGAATGTGGAGTTGCACCTTCCGCCAGAAGCTTATCTTATTATCACTAAACATGGCAATGTCTGCTTGGGGATTCTTGATGGCACCGAAGTAGGACTTGAAAATCTCAACATAATAGGAGACATTTCTTTACTAGATAAAATGGTCATTTATGACAACGAGAAGCAACAGATTGGATGGGCTTCTTCAAATTGTGATAGGCTTCCCAATGCGGAACGTGATTTGGAAGGCGATTTTCCACATCCATACGCAGCCAATTTGGGTATATTTGGGAACGGTTACCCTGCGTCTTTTGAAAATATAGACGATCAATGA 1350 0.4326 MDFRRKGITWHTLFVLFLLFSAIFPLSFSAANQPHKAKNLATHRLSSSAVFKVQGNVYPLGHYTVTLNIGYPAKPYDLDIDSGSDITWVQCDAPCKGCTKPRDQLYKPNHNLVQCAEQLCSEVHLPTDHNCASPDDQCDYEVEYADNGSSLGVLVRDYINFQFTNGSVVRPKIAFGCGYDQKYSGSTSPPSTAGVIGLGNGRASILTQLHSLGLIRNVVGHCLSSRGGGFLFFGDCPVPTSGIFWTTMLHTSSDSGPAELLFNGKATKVKGLQLIFDSGSSYTYFNSLAYQAVVNLVSDDLKGKQLTRATDDPSLPICWKGPKYFKSLNDVKKYFKPLAFSFTKTKNVELHLPPEAYLIITKHGNVCLGILDGTEVGLENLNIIGDISLLDKMVIYDNEKQQIGWASSNCDRLPNAERDLEGDFPHPYAANLGIFGNGYPASFENIDDQ 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02283 449 Gene3D Acid Proteases 256 417 IPR021109 -
Vimu1g02283 449 FunFam Aspartyl protease family protein 39 235 - -
Vimu1g02283 449 Pfam Xylanase inhibitor C-terminal 272 406 IPR032799 -
Vimu1g02283 449 Gene3D Acid Proteases 37 235 IPR021109 -
Vimu1g02283 449 Pfam Xylanase inhibitor N-terminal 63 235 IPR032861 -
Vimu1g02283 449 ProSiteProfiles Peptidase family A1 domain profile. 63 406 IPR033121 -
Vimu1g02283 449 FunFam Aspartic proteinase Asp1 isoform A 239 414 - -
Vimu1g02283 449 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 78 89 IPR001969 GO:0004190|GO:0006508
Vimu1g02283 449 PANTHER ASPARTYL PROTEASES 42 404 IPR001461 GO:0004190|GO:0006508
Vimu1g02283 449 SUPERFAMILY Acid proteases 55 414 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02283 Vimu-Chr1 33215911 33218877 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02283 19 417 Miscellaneous Gene Families AT1G77480 56.931 3.54e-163 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02283 - - gmx:100790299 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02283 1 33215911 33218877 Vimu1g02283 1 33215911 33218877 ECH
Vimu1g02283 1 33215911 33218877 Vimu10g02267 10 33138111 33140406 PCT