Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02267 ATGGATGTGAAAAGCAGGGGAATTTCACTCTTTTTGCTTCTTTCCATTTTCTCAACCTCCTTCTCAGACACCGATCAGGTTCTCAACTCCGAGAAGCTGACACTCTCAACCACTGTTCATTCCCATGCTTCCTCTTTCGTTTTTCAGATTAAAGGAAATGTTTATCCAATTGGGTATTACTCAGTGAGCCTTGCCATTGGCAATCCCGCTAAGTTTTATGATCTTGACATCGATACAGGAAGTGATCTCACTTGGCTTCAGTGTGATGCACCATGTAAAGGGTGCACTATACCTCAGAACCAACTTTACAAACCTCGCGGCAACGTTGTGATATGTGAGGATCCCTTGTGTGCTGAAGTCCAGTCAGCATTTCCCTGTACTGTAGCAAATGGGCAATGTGACTATGAGGTTCATTATGCACACCGTGTATCATCTCTGGGTGTGTTAGTCCGAGATTTTATTCCAGTTAAATTCACTAATGGATCTTTACAACTCCCTATTCTGGGCTTCGGGTGTGGATATGATCTAACGCATCCTGGTCATAATCCCCCACCTTCCACACCAGGTGTTCTTGGCCTTGGAAATGGCAAAACAAGCATTGTATTTCAGCTTCATTCTCTTGGCCTAATTCGTAATGTCGTAGGCCACTATTTAAGTGGGAGAGGAGGAGGTTTTCTATTCTTTGGAGATCAATTCATTCCCCAATCTGGAGTTGATTGGACACCCATGTTGCAAAGTTCGTCCGGGCAAGTGCAACAAAACTATAGAACAGGTCCAGCAGACCTGCTTTTCGATGGAAAACCTACTTCTGTGAAAGATCTAGAGCTTATCTTCGATAGTGGGAGCTCCTACACATACTTCAATTCCATAGCTCATAAAGTTCTTGTTGATCTGATAACTAATGATATAAAAGGGAAGTTATTGATTAGAGAAACTGCAGATTCATCTCTCCCAATTTGTTGGAAGGGTCTAAAGGCTTTAAAATCTTTACATGATGTCACTGGAAATTTTAAGCCACTGGTACTCAGCTTCACAAAACCAAAGAATTCGCTGCTGCAAGTACCACCAGAAGCTTATCTAATTGTCACTGAACATGGCAATGTCTGCTTGGGGATTCTAGACGCCACTGAAATAGGACGGGAAAATATCAACATAATTGGAGATATATCTTTACAAGATAAGATTGTGATTTATGATAACGAGAAACATCAGATTGGATGGGCCTCTCCCAATGGCAAGTGTGATGGACCTTCCAAATTATAA 1263 0.4188 MDVKSRGISLFLLLSIFSTSFSDTDQVLNSEKLTLSTTVHSHASSFVFQIKGNVYPIGYYSVSLAIGNPAKFYDLDIDTGSDLTWLQCDAPCKGCTIPQNQLYKPRGNVVICEDPLCAEVQSAFPCTVANGQCDYEVHYAHRVSSLGVLVRDFIPVKFTNGSLQLPILGFGCGYDLTHPGHNPPPSTPGVLGLGNGKTSIVFQLHSLGLIRNVVGHYLSGRGGGFLFFGDQFIPQSGVDWTPMLQSSSGQVQQNYRTGPADLLFDGKPTSVKDLELIFDSGSSYTYFNSIAHKVLVDLITNDIKGKLLIRETADSSLPICWKGLKALKSLHDVTGNFKPLVLSFTKPKNSLLQVPPEAYLIVTEHGNVCLGILDATEIGRENINIIGDISLQDKIVIYDNEKHQIGWASPNGKCDGPSKL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02267 420 FunFam Aspartic proteinase Asp1 isoform A 234 417 - -
Vimu10g02267 420 FunFam Aspartyl protease family protein 36 230 - -
Vimu10g02267 420 Gene3D Acid Proteases 32 230 IPR021109 -
Vimu10g02267 420 Gene3D Acid Proteases 231 416 IPR021109 -
Vimu10g02267 420 PANTHER ASPARTYL PROTEASES 25 406 IPR001461 GO:0004190|GO:0006508
Vimu10g02267 420 Pfam Xylanase inhibitor N-terminal 60 230 IPR032861 -
Vimu10g02267 420 SUPERFAMILY Acid proteases 53 410 IPR021109 -
Vimu10g02267 420 PRINTS Pepsin (A1) aspartic protease family signature 276 287 IPR001461 GO:0004190|GO:0006508
Vimu10g02267 420 PRINTS Pepsin (A1) aspartic protease family signature 384 399 IPR001461 GO:0004190|GO:0006508
Vimu10g02267 420 PRINTS Pepsin (A1) aspartic protease family signature 66 86 IPR001461 GO:0004190|GO:0006508
Vimu10g02267 420 Pfam Xylanase inhibitor C-terminal 274 408 IPR032799 -
Vimu10g02267 420 ProSiteProfiles Peptidase family A1 domain profile. 60 408 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02267 Vimu-Chr10 33138111 33140406 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02267 30 409 Miscellaneous Gene Families AT1G44130 53.247 2.02e-145 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02267 - - gmx:100803640 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02283 1 33215911 33218877 Vimu10g02267 10 33138111 33140406 PCT