Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02725 ATGGATGGTCAACTTGGTACAAATGGAGAGAAGTCACATGACAATGAATATGAGGTTGGAGACAATTGTTTAGTTCCCCGGTTACTGAACATGTTTGTTGAATTGCACCCTGTCAATTCTTCATCGGGTGTGTCTGAAACAGAAGCCAAAACATCACTTAAGATATGTGCTATCAAAGCTGGAGGAATGATGTCTCTGGCTATTGATAACCGTGGGACCCTATGGATGTGGGGAAACTACCCACAACAAAGTAAAGAAGGTGAGTTAGCACTTGTAAGCAGTTTCACTCCAACTCCAGTTCGGGATTTTCTGGGTCGATCTGTTGTCAAGGTTGCATGTGGAAATGAGCATATCGTAGCTCTGGTTAGTGCTGGCGAATCATACAACGGTGAAGATCTAGAATGCTACTCTTGGGGTTATAATACCCGTGGCCAATTGGGCTTGGGGGACAGAGAGAACAGGCTGCATCCGGAAGTTGTCAAAACATTTGATGAGGAATCACCCTATGAGGTGGCATGTGGTGCCTATCACACTGCTTTGCTAACTCGTATAAAGAAAAGTAGTAGTGACACATTAGACAGCACATGCTGGACCTTTGGCCTTGGAGATAATGGCCAGCTTGGGCATGGAACAACACAAAGCACATTATTTCCTACACCTGTTAAGGAATTGCCACAAAATGTAACCCTTATTTGTGTTGACTGTGGTTTGTTTCATACAAGCATAGTTTCCTCAGATGGGGATGTGTGGTCATGGGGAATGGAGAAGGGTCTTGGCTTATGCCCTGATGCTAGTCGAGTTGGAACAGATTCTGGTGATGCACTGTCTCCCCGTCTTATGTCATGGAAGCCAAATCAACCTAAATTCCCAGATCCAGTTAAACTTGCATGTGGGGCCGCACATACTGTTATAATTGCGCAAGGGGGATATAGAATGTGGTCTTGGGGTAGGGGAAGAAGTGGAGTCCTTGGAGATGGTAAAGGAGTAGATTGTTACACTCCCACGCTCGTACAATGGCCTCAAATGATGGATGACTCTGAGGAAGAGGAAGTAAAAAGCGATGGTGAGCAAGATAAGGCTAGAGAAAAGGAGACTGAAGCAACAACTGAAGCAGAAGAGAAACTATCCTCAGCATTGAATGAGCTGAAGCTGCTTCAAACAAAGCTATCTGTGATTAAAAAATATGCCAGTATACTGCATGGTTCTGTTTTTGGAAAGCCCTTTGACGAGCAAGATATCCCTGATTCATTGCAGAATTCAGGTTCATTTGACATGGGAAAAGAATGGGAGAAGATGTTAGAGACCGCAGATCATAGGAAGCTAATTAGGTTGGAAATGTTTTACCGAGACATGCTTGCTGGAGTAAAAGATGAACTAATGAAGAGAAGGATCAAGGAAATTGTAAAAGAGTGTCTCCAATCTTCAGAGGTGTAA 1434 0.4372 MDGQLGTNGEKSHDNEYEVGDNCLVPRLLNMFVELHPVNSSSGVSETEAKTSLKICAIKAGGMMSLAIDNRGTLWMWGNYPQQSKEGELALVSSFTPTPVRDFLGRSVVKVACGNEHIVALVSAGESYNGEDLECYSWGYNTRGQLGLGDRENRLHPEVVKTFDEESPYEVACGAYHTALLTRIKKSSSDTLDSTCWTFGLGDNGQLGHGTTQSTLFPTPVKELPQNVTLICVDCGLFHTSIVSSDGDVWSWGMEKGLGLCPDASRVGTDSGDALSPRLMSWKPNQPKFPDPVKLACGAAHTVIIAQGGYRMWSWGRGRSGVLGDGKGVDCYTPTLVQWPQMMDDSEEEEVKSDGEQDKAREKETEATTEAEEKLSSALNELKLLQTKLSVIKKYASILHGSVFGKPFDEQDIPDSLQNSGSFDMGKEWEKMLETADHRKLIRLEMFYRDMLAGVKDELMKRRIKEIVKECLQSSEV 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02725 477 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 72 124 IPR000408 -
Vimu10g02725 477 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 15 391 - -
Vimu10g02725 477 Coils Coil 361 388 - -
Vimu10g02725 477 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 247 308 IPR000408 -
Vimu10g02725 477 MobiDBLite consensus disorder prediction 342 372 - -
Vimu10g02725 477 SUPERFAMILY RCC1/BLIP-II 54 341 IPR009091 -
Vimu10g02725 477 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 133 184 IPR000408 -
Vimu10g02725 477 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 171 181 IPR000408 -
Vimu10g02725 477 Gene3D - 1 374 IPR009091 -
Vimu10g02725 477 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 194 246 IPR000408 -
Vimu10g02725 477 Pfam Regulator of chromosome condensation (RCC1) repeat 246 305 IPR000408 -
Vimu10g02725 477 Pfam Regulator of chromosome condensation (RCC1) repeat 196 241 IPR000408 -
Vimu10g02725 477 Pfam Regulator of chromosome condensation (RCC1) repeat 135 181 IPR000408 -
Vimu10g02725 477 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 111 121 IPR000408 -
Vimu10g02725 477 MobiDBLite consensus disorder prediction 353 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02725 Vimu-Chr10 38640419 38641928 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02725 - - gmx:100815199 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02725 10 38640419 38641928 Vimu10g02725 10 38640419 38641928 ECH
Vimu10g02725 10 38640419 38641928 Vimu1g02033 1 27883906 27885797 PCT