Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01947 ATGAAGAGAGTGCTCCTGATACTAAACTCGGTTCTTCTAGCCCTAGGCACTTCCGGTGGCCCCCTCGTAATGCGTCTCTACTTCATCCACGGCGGCAACCGAATCTGGCTCTCCAGCTTCCTCGAAACCGCCGCTTTCCCTCTCATTCTCATTCCCTTAACAATCTCTCACCTTCATCCCACTTTTCATCATTCACCAAAACCTAACCTCGTCTCTATCAAACTCCCTCTCTTTATCGCCTCCGCCGTTATCGGAATTCTCACCGGCCTCGACGACTACCTCTACGCCTGCGGCATAGCGCGCCTTCCTGTCTCCACTTCCTCCCTTATCCAAGCCTCGCACCTCGCCTTCACCGCCGTCTTTGCCTTCCTCCTCGTTAGGCACAAGTTCACGGTGTACTCCATCAACGCCATCGTGCTTCTCACCGTCGCAGCGGTGGTGCTGGCGCTGCGTTCCGGTGGAGACCGTCCGCCAGGCGAGTCCACGCGGCAGTACGTGATCGGTTTCGTTATGATTCTGGCGGCTGCGGCGCTGTACGGATTGGTCCTGCCGTTGATGGAGTTGGTGTACAAACGGAGCAAGCAGCGCGTTACGTACTCTCTTGTGATGGAGATTCAGCTTGTGATGTGCTTCTTTGCTACCTTGTTCTGCACCCTTGGCATGCTCATCAATAATGACTTCAAGGTGATTTCGCGAGAAGCAAAAGAGTATGAACTTGGGGAAACCAAGTACTATGTTGTGCTGGTGGGGAGTGCAATAATGTGGCAGTTCTTCTTCTTGGGAGCAATAGGGGTTATCTTTTGCTCCTCGTCTTTGTTTTCAGGAATTATAATTGCTGCTTTTCTTCCAGTAACTGAAGTTTTGGGTGTTATTGTATACAAAGAAAATTTTGAGGCAGAGAAAGGAGTTGCTTTGGTGCTGTCTCTTTGGGGGTTTGTGTCATATTTCTTTGGTGAAATTAAACAAGAAAGGGAAATGAACAAGAATGGTTGCCCAGAAACAGAGCTACCTCAAAGTCTTTCTCCCAATGCATGA 1035 0.5005 MKRVLLILNSVLLALGTSGGPLVMRLYFIHGGNRIWLSSFLETAAFPLILIPLTISHLHPTFHHSPKPNLVSIKLPLFIASAVIGILTGLDDYLYACGIARLPVSTSSLIQASHLAFTAVFAFLLVRHKFTVYSINAIVLLTVAAVVLALRSGGDRPPGESTRQYVIGFVMILAAAALYGLVLPLMELVYKRSKQRVTYSLVMEIQLVMCFFATLFCTLGMLINNDFKVISREAKEYELGETKYYVVLVGSAIMWQFFFLGAIGVIFCSSSLFSGIIIAAFLPVTEVLGVIVYKENFEAEKGVALVLSLWGFVSYFFGEIKQEREMNKNGCPETELPQSLSPNA 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01947 344 PANTHER OS09G0467300 PROTEIN-RELATED 2 327 IPR030182 GO:0015211|GO:0016020
Vimu1g01947 344 Pfam Purine nucleobase transmembrane transport 5 324 - -
Vimu1g01947 344 SUPERFAMILY Multidrug resistance efflux transporter EmrE 74 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01947 Vimu-Chr1 25659902 25661417 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01947 1 337 Organic Solute Cotransporters AT1G28230 56.196 1.02e-132 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01947 - - vra:106764151 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01947 1 25659902 25661417 Vimu1g01947 1 25659902 25661417 ECH
Vimu1g01947 1 25659902 25661417 Vimu10g02577 10 37126812 37128054 PCT