Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01946 ATGTCCCTCCGCAAGACACTCACAAATCTCCTACACACTTTCAACGACAAAACCGCACTGATCGCAGCATCACTCTCACTCAAACGCGGCGTGTCCTCCGTTCGCGTCCGTGTCCTTCGCGCCACCACTCACCGCCTCACCGCTCCTCCGTCCGAGTCCCAAATCGCCGCTGTTCTCTCCGCCGGCCGCGGCTCATATCTCCTACCACGCACCTGCATAGAGGCAATCATGGACCGCCTTCACAGAACCCAAAGCGCCACGGTGGCACTGAAATGCCTCTTCACTCTCCACAACATCGTATCCGAGGGACCCTTAACGCTAAAGGACAATCTCTCGCACTACCCTTCCCACGGAGGAAATAACGCCCTTAACCTCGCTACCTTCCGCGACGACACGGACGTGCAATCTCTGGAGCTCAGCTCGTGGGTTCGATGGTACGCGAATGTTCTGGAACATGTCTTGACTGTTTCGCGCGTTTTGGGTTATTATCTGATAAACAAGGGCATTGAAAGAGAGTTTTCGGGGGTGTCTAGTGAGTTGCTGTGTGAAATACGAGGTTTAGTCGATTTCGTGGAGCAGGTGAGTCACGCGCCCGAGTCGCTGCACCTTCAGAGGATCGACTTGGTGTATGGCGTTGTGAGATTGGTGTGCGATGATTACGGGCGCGTGCAGCGCGAGATTTCACAGCGCGTGGAGGAGAGTGAGAGGAGGGTGGGGGATTTGGGTGTGGACGAGTTGAGAGAGTTGGTGCGGTGTTTGAAGAGATTGGAAGAGTGTAAGGAAAGGTTAGTGGTTTTGTTTGTGAATAGAAAGAAAAACGATTCGTTTTGGGATTTGATTGGAAGAGTTAAGAATAAGGGGGTGGTGGTGATGGAGGATACGGAGGGGAAGTGGTTGACGGTGGTGGTGAAGGGTAGGAACGATTTGACTGAGTCGACTCGGTTCACCAACCCGTTTTTAGAGCCCGGCGAAATTCTATATTCCGGTCCCACCGGGTGGCGCGTTGCCACATGTCAGCTAACTGTTCCAGCGTTGGGATGA 1041 0.536 MSLRKTLTNLLHTFNDKTALIAASLSLKRGVSSVRVRVLRATTHRLTAPPSESQIAAVLSAGRGSYLLPRTCIEAIMDRLHRTQSATVALKCLFTLHNIVSEGPLTLKDNLSHYPSHGGNNALNLATFRDDTDVQSLELSSWVRWYANVLEHVLTVSRVLGYYLINKGIEREFSGVSSELLCEIRGLVDFVEQVSHAPESLHLQRIDLVYGVVRLVCDDYGRVQREISQRVEESERRVGDLGVDELRELVRCLKRLEECKERLVVLFVNRKKNDSFWDLIGRVKNKGVVVMEDTEGKWLTVVVKGRNDLTESTRFTNPFLEPGEILYSGPTGWRVATCQLTVPALG 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01946 346 Pfam ANTH domain 35 157 IPR011417 GO:0005543
Vimu1g01946 346 PANTHER CLATHRIN ASSEMBLY PROTEIN 10 294 IPR045192 GO:0048268|GO:0072583
Vimu1g01946 346 FunFam Putative clathrin assembly protein At4g40080 6 163 - -
Vimu1g01946 346 Gene3D - 5 163 IPR008942 -
Vimu1g01946 346 SMART enth_2 32 164 IPR013809 -
Vimu1g01946 346 ProSiteProfiles ENTH domain profile. 26 164 IPR013809 -
Vimu1g01946 346 SUPERFAMILY ENTH/VHS domain 34 161 IPR008942 -
Vimu1g01946 346 CDD ANTH_N_AP180_plant 35 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01946 Vimu-Chr1 25653331 25655059 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01946 - - gmx:100817573 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01946 1 25653331 25655059 Vimu1g01946 1 25653331 25655059 ECH
Vimu1g01946 1 25653331 25655059 Vimu10g02571 10 37069054 37072270 PCT