Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02571 ATGTATGTGAAAATATTATTTCTCTTTCAGTTAATGCACACCCAAAAGACTAACACACCTCTTCATATATATATATATTCTATTTCTCTATATTTGGTAACATTCATAATCCAAATGACGCAGCAAAAGCGGTTCAAAAATTTGACCCAAAACCTCAAAGATAAAGCCTCCGTCATCGCCGCGGTCCTATCCCCGAAGCGCCACGTCTCCTCCGTCCGGGTTCACGTTCTCCGCGCCACCACGCACGCCCTCACGGCACCACCCTCCGAAGAAACCATCGCCGCCGTACTCACGGTGGGGCAGGGCTCCAACCGCAACCCGCGCGCTTGCATCGACGCGCTCATGGACCGTCTGCACCAGACGCGCAGCGCCACGGTGGCGCTCAAGTGCCTCTTCACTCTACACAACGTCGTCGTAAAGGGACCCTTCACTTTGAAGGACCAACTCTCGTGTTACCCTTCCTACGGCGGCCACAACTTTCTTAACCTCTCGAACTTTCGCGACGAGTCAGACGTGGAATCGGTGGAGCTGAGTTCGTGGGTGCGGTGGTACGCCGGCGTGCTGGAACAGAGCCTCACGGTTTCCAGAGTCTTGGGGTATTACCTCAACGCCTCTCGCGAATCCCAAGAAAGCAAAAAGATCATCCTTTCAAACGCGTCGAATGCGGATTTGTTGTACAAGGTGGAGGCGCTCGTGGGTTTCGTCGAACAAATAAGCCATGTGCCCGATTCGCTGCACCTGCAGAGGAACGAGTTGGTTTACGAGGTGGTACGGCTGGTGGGCGAGGATTATAGGAGCGTGCAGGTTGAGATTTTGTTGCGCGTGGAAGAACTCGGGGAGAGAATGGATGATCTTGATGTGGGTGAGTTGAACGAGTTGGTGGGATATTTAGGGAGATTGGAGGAGACTCAGGAGAAGTTGGTTCTTTTGTTCGTGAATAGGAAAAGGAACAATGGATTCTGGGATTTGGTTCAGAAGACTAAGGTCAAGGGAATGGCCAAAAAGAGGGAGATTGAAGGGAAGTGGCTCACGGTGGTCGTTAACACCGGCGCCGCCGAATTGGTTCGCTCCACCAACCCGTTTCTTGAGCCGGGGCAACCCAGTCCGGTCCCACGAATAGATTTTGCAACGGTAAGGTGA 1140 0.5246 MYVKILFLFQLMHTQKTNTPLHIYIYSISLYLVTFIIQMTQQKRFKNLTQNLKDKASVIAAVLSPKRHVSSVRVHVLRATTHALTAPPSEETIAAVLTVGQGSNRNPRACIDALMDRLHQTRSATVALKCLFTLHNVVVKGPFTLKDQLSCYPSYGGHNFLNLSNFRDESDVESVELSSWVRWYAGVLEQSLTVSRVLGYYLNASRESQESKKIILSNASNADLLYKVEALVGFVEQISHVPDSLHLQRNELVYEVVRLVGEDYRSVQVEILLRVEELGERMDDLDVGELNELVGYLGRLEETQEKLVLLFVNRKRNNGFWDLVQKTKVKGMAKKREIEGKWLTVVVNTGAAELVRSTNPFLEPGQPSPVPRIDFATVR 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02571 379 FunFam Putative clathrin assembly protein At4g40080 44 201 - -
Vimu10g02571 379 ProSiteProfiles ENTH domain profile. 64 202 IPR013809 -
Vimu10g02571 379 CDD ANTH_N_AP180_plant 73 195 - -
Vimu10g02571 379 Gene3D - 42 201 IPR008942 -
Vimu10g02571 379 SUPERFAMILY ENTH/VHS domain 72 199 IPR008942 -
Vimu10g02571 379 Pfam ANTH domain 73 260 IPR011417 GO:0005543
Vimu10g02571 379 PANTHER CLATHRIN ASSEMBLY PROTEIN 46 332 IPR045192 GO:0048268|GO:0072583
Vimu10g02571 379 SMART enth_2 70 202 IPR013809 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02571 Vimu-Chr10 37069054 37072270 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02571 - - gmx:100788852 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02571 10 37069054 37072270 Vimu10g02571 10 37069054 37072270 ECH
Vimu1g01946 1 25653331 25655059 Vimu10g02571 10 37069054 37072270 PCT