Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01925 ATGGCTTCTTCTATTGCCTTAGTTTTCAGTGTTTGTCTAGCACTCAACATGGTCATGCCAACCCTTGCAGCCACCCACACAGTGGGAGATACCTCAGGTTGGGCAATCGGTGGTGATTACAGTACATGGGCTAGTGGATTGAAATTTAGAGTTGGAGATAGCCTTGACAGCAGCGGCGCCACCACCATTACCCTGAAGACTGCTGGCACTCATTACTTCATATGTGCTGCTCCTGGCCATTGTCAGGGTGGCATGAAGCTTGCTGTTAAGGTTAAGGCTAAAAAGGTTTCTGATTCTGCTGCAGCACCTTCACCTGCTAAGGACTCACCACCCTCTGACTCTGATAACACCAAAGACACTCCTACTACTTCCACCACCACCAGCTCTACAACTCCAACCTCCACCACCCCTTCTACTTCATCCTCCTCCACCACCACTGCCACAACATCATCAGCAATTCCTGCCTCACCAATTGGTGTTGCTGTGTTTATTGGTTGTTCGATCTCATACTTGGTGTTGCTTCTGCTGTGA 531 0.4915 MASSIALVFSVCLALNMVMPTLAATHTVGDTSGWAIGGDYSTWASGLKFRVGDSLDSSGATTITLKTAGTHYFICAAPGHCQGGMKLAVKVKAKKVSDSAAAPSPAKDSPPSDSDNTKDTPTTSTTTSSTTPTSTTPSTSSSSTTTATTSSAIPASPIGVAVFIGCSISYLVLLLL 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01925 176 MobiDBLite consensus disorder prediction 109 151 - -
Vimu1g01925 176 ProSiteProfiles Phytocyanin domain profile. 1 93 IPR003245 GO:0009055
Vimu1g01925 176 SUPERFAMILY Cupredoxins 23 92 IPR008972 -
Vimu1g01925 176 ProSitePatterns Type-1 copper (blue) proteins signature. 69 85 IPR028871 -
Vimu1g01925 176 MobiDBLite consensus disorder prediction 98 151 - -
Vimu1g01925 176 Gene3D - 57 104 IPR008972 -
Vimu1g01925 176 Gene3D - 22 56 IPR008972 -
Vimu1g01925 176 PANTHER BLUE COPPER PROTEIN 57 124 IPR039391 GO:0009055
Vimu1g01925 176 Pfam Plastocyanin-like domain 58 85 IPR003245 GO:0009055
Vimu1g01925 176 CDD Phytocyanin 24 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01925 Vimu-Chr1 24767267 24768158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01925 1 91 Miscellaneous Gene Families AT2G32300 36.364 1.41e-16 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01925 - - gmx:100305666 153.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01925 1 24767267 24768158 Vimu1g01925 1 24767267 24768158 ECH
Vimu1g01925 1 24767267 24768158 Vimu10g02485 10 36042755 36043403 PCT