Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02485 ATGGCTTCCTCCACTGCTTTAGTTTTCGGCTCACTCATAGCAATCACCATGGTTCTGCCAACCCTCGCAACCGTCCACACCGTCGGAGATTCTTCAGGTTGGGCAATTGGTGCCGATTATAGTTCATGGACCGGTGACAAAACCTTCGCAGTGGGTGATACTCTTGTGTTCAATTATGGAGCTGGGCACACAGTGGATGAAGTTAAAGAGAGTGACTACAAATCATGCAGCGCAGGGAATTCAATTAGTACAGACAGTAGTGGAGCAACCACCATTGCCCTCAAGACTGCAGGCACTCATTACTTCATATGTTCTGTTCCCGGACATTGTTCTGGCGGCATGAAACTTGCCGTCACTGTCAAAGCAGGAAAAGACACTACTCCTTCAACTGGGAAGGCTCCACCTTCTGATGGCACAGCCACCACAACCACGCCAACCACCACCACCACTACAACCACTGCTGCTAGATCAAACTCGGCTTCAACAACTGGTGTGTTTTCAGTTGTTGCCATGTTGATTGTTTCATTGATCTCTTTCTTTGGCTTGCGCATGGCGTGGGAAATTTGA 567 0.4868 MASSTALVFGSLIAITMVLPTLATVHTVGDSSGWAIGADYSSWTGDKTFAVGDTLVFNYGAGHTVDEVKESDYKSCSAGNSISTDSSGATTIALKTAGTHYFICSVPGHCSGGMKLAVTVKAGKDTTPSTGKAPPSDGTATTTTPTTTTTTTTAARSNSASTTGVFSVVAMLIVSLISFFGLRMAWEI 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02485 188 Gene3D - 22 127 IPR008972 -
Vimu10g02485 188 PANTHER BLUE COPPER PROTEIN 23 149 IPR039391 GO:0009055
Vimu10g02485 188 SUPERFAMILY Cupredoxins 23 120 IPR008972 -
Vimu10g02485 188 ProSitePatterns Type-1 copper (blue) proteins signature. 98 114 IPR028871 -
Vimu10g02485 188 CDD Phytocyanin 24 120 - -
Vimu10g02485 188 MobiDBLite consensus disorder prediction 124 156 - -
Vimu10g02485 188 ProSiteProfiles Phytocyanin domain profile. 24 122 IPR003245 GO:0009055
Vimu10g02485 188 FunFam Blue copper 22 126 - -
Vimu10g02485 188 Pfam Plastocyanin-like domain 34 114 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02485 Vimu-Chr10 36042755 36043403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02485 15 120 Miscellaneous Gene Families AT1G22480 59.434 5.52e-38 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02485 - - gmx:100306522 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02485 10 36042755 36043403 Vimu10g02485 10 36042755 36043403 ECH
Vimu1g01925 1 24767267 24768158 Vimu10g02485 10 36042755 36043403 PCT