Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01916 ATGGACCTACCTCCAGTTCGAAATACAGTCCAATGGATCATACTCACATTAGATGGATATTATCAAGCCTTTTCAAGGGCATTTATGAGGGTCAATGGAACCACACAAGCTCCTGTCATGCATTTTGCTGCCGAAACATCACTTGGGGTGGTTACTATAAGAGCATTGAACATGGTGAACAAATTTTTCAACAACTACCTAAAGCTTGTGGACATGGACGCAACAGTATTCTTTCACGTCAATGTGGCCATGGAATGGTCAATTTTAAGGATTCAAATACTTCACAACTTGACAGTATTCACAATAGTTGCATTACTTATTCTACTTCCCAGGGGATTTGTATCATCGGGTCTTGTGGGATTGTCTCTTTCTTATGCGTTGACATTGAAAGAATCACAAGTATTTTGGAGTAGGATGTATAGCATGATGTCTGACCATATCATCTCTGCTGACAGAATCAAGCAATTCATTCACATTTCAACTCTTTTCAAGGGCAGCATTCAGACCAACTTGGACCCACTAGACTTCTATGAAGATGATGCAATATGGAAGGCTTTAGAGAAATTTGGAATCCTACCCATCACTATAGTACTAAAAGTAATAAATGTTTATTCAGCTCCTACAGAGTCGCGAGGATATCTTTTAGTACACACAAATGGTGGGCTCAACCAAATGCGTTCTGGGATATGTGATATGGTAGCAGTGGCTCGTATAATAAATGCCACTCTTGTAATTCCAGAACTTGATAAAAGATCATTTTGGCAAGATACTAGCAATTTCTCTGATGTTTTTGATGAAGAGCATTTTATGAATTCTCTAGCTAATGATATAAAAATCATCAAAAAACTCCCCAACGATCTGGTTAATGAAACCAAAGTGGTCAAACAATTCATAAGCTGGTCTGGCATGGATTACTACGAGAATGAGATTGCTAGCTTGTGGGAAGAATACCAAGTTATTCGAGCTTCCAAATCTGATTCACGATTAGCAAACAACAATCTACCTCCAGACATTCAGAAGCTTCGATGCCGGGCTTGTTATGAAGCACTTCGCTTCTCTCCTCACATTGAACAACTGGGAAAATTGTTGGTGGAGAGGATGAGGTCATTTGGTCCTTACATTGCGCTGCACTTGCGTTACGAGAAGGATATGCTTGCATTTAGTGGCTGCACCCATGATTTATCTCTTGTTGAAGCTGAAGAGCTACGGATGATCAGGGAAAACATTTCCTATTGGAAAATAAAGGAGATTGATCCAATAGAACAGAGGTCCAAAGGGCTTTGCCCCTTAACTCCAAAGGAAGTTGGGATTTTTCTTACTGCTCTTGGATACCCATCAACAACTCCGATATATATTGCTGCTGGAGAGATATATGGGGGTGAGTCCCACATGGCTGAATTGCGTTCCCGGTATCCATTGTTGATGAGCAAGGAAAAGTTGGCATCTATAGAAGAGCTTGAACCTTTTTCCAATCATGCATCCCAAATGGCTGCTCTTGACTATATTGTATCTATTGAAAGTGATGTATTCATACCTTCTTATTCTGGAAACATGGCAAAGGCTGTTGAGGGTCATCGTCGTTTTCTTGGACGTGGAAGAACAATATCTCCAGACAAGAAAGCTCTCGTTCGCCTGTTTGATAAACTGGATCAGGGACTAATGACGGAGGGGAAGAAACTATCAAATAGGATTATTGATCTCCACAGAAGACGACTTGGTTCTCCCAGAAAGAGAAAAGGGCCAATTTCTGGGACAAAGGGCATGGAAAGGTTCCGGTCAGAAGAAACCTTTTATGCTAATCCCTTACCTGATTGTTTATGCCGGACAGAACCACCACCACCACTAAACACCTCTCACATTGTTTGA 1866 0.4089 MDLPPVRNTVQWIILTLDGYYQAFSRAFMRVNGTTQAPVMHFAAETSLGVVTIRALNMVNKFFNNYLKLVDMDATVFFHVNVAMEWSILRIQILHNLTVFTIVALLILLPRGFVSSGLVGLSLSYALTLKESQVFWSRMYSMMSDHIISADRIKQFIHISTLFKGSIQTNLDPLDFYEDDAIWKALEKFGILPITIVLKVINVYSAPTESRGYLLVHTNGGLNQMRSGICDMVAVARIINATLVIPELDKRSFWQDTSNFSDVFDEEHFMNSLANDIKIIKKLPNDLVNETKVVKQFISWSGMDYYENEIASLWEEYQVIRASKSDSRLANNNLPPDIQKLRCRACYEALRFSPHIEQLGKLLVERMRSFGPYIALHLRYEKDMLAFSGCTHDLSLVEAEELRMIRENISYWKIKEIDPIEQRSKGLCPLTPKEVGIFLTALGYPSTTPIYIAAGEIYGGESHMAELRSRYPLLMSKEKLASIEELEPFSNHASQMAALDYIVSIESDVFIPSYSGNMAKAVEGHRRFLGRGRTISPDKKALVRLFDKLDQGLMTEGKKLSNRIIDLHRRRLGSPRKRKGPISGTKGMERFRSEETFYANPLPDCLCRTEPPPPLNTSHIV 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01916 621 CDD O-FucT_plant 213 534 IPR024709 -
Vimu1g01916 621 Gene3D ABC transporter type 1, transmembrane domain 12 161 IPR036640 GO:0005524|GO:0016020
Vimu1g01916 621 SUPERFAMILY ABC transporter transmembrane region 15 157 IPR036640 GO:0005524|GO:0016020
Vimu1g01916 621 PANTHER OS02G0726500 PROTEIN-RELATED 151 608 - -
Vimu1g01916 621 FunFam O-fucosyltransferase 28 344 538 - -
Vimu1g01916 621 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 129 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu1g01916 621 Pfam GDP-fucose protein O-fucosyltransferase 213 528 IPR019378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01916 Vimu-Chr1 24396419 24402040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01916 86 611 Miscellaneous Gene Families AT1G22460 59.672 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01916 - - gmx:100795727 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01916 1 24396419 24402040 Vimu1g01916 1 24396419 24402040 ECH
Vimu1g01916 1 24396419 24402040 Vimu10g02493 10 36117720 36121447 PCT