Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01902 ATGGCAATCTCCTCAACGTCTAACTCTCTCATTCCCACCAAATCTCTCATCCCCCAATCCAACCCTCTCCTTCCATCCACAAACATCAGGCCTGCCCTCAAGCCCAGGCCCGGCCCATCTCCTTCCATCTATGCAGTCCACGCGGCCGAGCCCGCCAAAAACCCCGTCGTCTCTGACAAGCCCAAGCCCCAGTCCCCGCCTGCCCCGGCCCCGGCCCGGCCCGGAAAATGGGCCGTGGACAGCTGGACGGCGAAGAAGGCCCTGCAGCTGCCCGAGTACCCGAGCAAGGAGGATCTGGAGTCCGTTCTCCACACGCTCGAGGCGTTTCCGCCTATCGTCTTCGCCGGCGAGGCACGGACGCTGGAGGAACGCCTTGGCGAAGCTGCTCTCGGAAATGCCTTCCTACTCCAAGGCGGTGACTGCGCCGAAAGCTTCAAGGAGTTCAATGCCAACAACATCCGTGACACCTTCCGAATCCTCCTCCAGATGAGCGTCGTCATGATGTTCGGCGGCCAAATGCCCGTCATCAAGGTAAAAAATCTGAACCGAGACAATCTTGTTCGATTGAATATCCAGGTGGGGAGAATGGCTGGGCAGTTTGCGAAGCCGAGATCGGATTCGTTTGAGGAGAAGAACGGCGTGAAGCTTCCGAGTTACAGAGGGGATAATATTAACGGAGATGCGTTTGATGAAAAGTCAAGGATTCCAGATCCGCAGAGGATGATCAGGGCTTATTGTCAAGCTGCAGCTACGCTTAATCTTCTCAGAGCTTTCGCTACTGGAGGTTATGCCGCTATGCAGAGGGTTACTCAATGGAATTTGGACTTCACCGAGCACAGTGAACAGGGAGATAGGTACCGCGAGCTTGCTAACCGAGTTGATGAGGCTCTTGGATTCATGGCTGCTGCTGGGCTCACAGTGGACCATCCAATCATGAAAACAACCGAATTTTGGACTTCTCATGAGTGCTTATTGTTGCCATATGAACAATCCCTCACTAGGTTGGATTCAACTTCTGGTCTCTACTATGATTGCTCAGCCCATATGCTTTGGGTTGGAGAACGAACCAGACAGCTCGATGGTGCGCATGTTGAGTTTCTAAGAGGAGTTGCTAACCCCTTGGGAATTAAGGTAAGTGATAAGATGGATCCAAATGAGCTTGTTAAACTCATTGAGATCTTGAATCCCCAAAACAAACCAGGGAGAATAACTGTGATCACTAGGATGGGAGCTGAAAATATGAGGGTGAAGCTTCCACATCTCATCAGGGCAGTGCGCAGGGCAGGACAAATTGTCACTTGGGTCAGTGATCCTATGCACGGAAACACCATTAAGGCTCCCTGTGGTCTTAAAACTCGCCCCTTCGATTCCATCAGGGCTGAAGTGAGAGCATTCTTCGATGTGCACGAGCAAGAAGGAAGCCACCCAGGAGGGGTTCATCTAGAGATGACGGGTCAAAATGTGACTGAGTGCATTGGTGGATCAAGAACAGTGACATTTGATGACTTGAGCTCACGTTACCACACACACTGTGACCCAAGGCTCAATGCTTCACAATCTCTCGAGCTTGCTTTCATCATCGCTGAGCGTTTGAGAAAGAGCAGGATGAGATCGCAGCAAGCAAGTGCCCCTTTAGGACTGTAA 1644 0.5201 MAISSTSNSLIPTKSLIPQSNPLLPSTNIRPALKPRPGPSPSIYAVHAAEPAKNPVVSDKPKPQSPPAPAPARPGKWAVDSWTAKKALQLPEYPSKEDLESVLHTLEAFPPIVFAGEARTLEERLGEAALGNAFLLQGGDCAESFKEFNANNIRDTFRILLQMSVVMMFGGQMPVIKVKNLNRDNLVRLNIQVGRMAGQFAKPRSDSFEEKNGVKLPSYRGDNINGDAFDEKSRIPDPQRMIRAYCQAAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELANRVDEALGFMAAAGLTVDHPIMKTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITVITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKSRMRSQQASAPLGL 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01902 547 NCBIfam 3-deoxy-7-phosphoheptulonate synthase class II 77 534 IPR002480 GO:0003849|GO:0009073
Vimu1g01902 547 FunFam Phospho-2-dehydro-3-deoxyheptonate aldolase 281 533 - -
Vimu1g01902 547 MobiDBLite consensus disorder prediction 1 27 - -
Vimu1g01902 547 SUPERFAMILY Aldolase 72 532 - -
Vimu1g01902 547 Pfam Class-II DAHP synthetase family 77 528 IPR002480 GO:0003849|GO:0009073
Vimu1g01902 547 MobiDBLite consensus disorder prediction 1 76 - -
Vimu1g01902 547 Gene3D Aldolase class I 289 533 IPR013785 -
Vimu1g01902 547 Gene3D Aldolase class I 110 288 IPR013785 -
Vimu1g01902 547 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2 42 541 IPR002480 GO:0003849|GO:0009073
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01902 Vimu-Chr1 24012898 24017019 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01902 K01626 - gmx:100797019 976.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01902 1 24012898 24017019 Vimu1g01902 1 24012898 24017019 ECH
Vimu1g01902 1 24012898 24017019 Vimu10g02499 10 36204467 36208189 PCT