Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02499 ATGGCCACCGCCGCTTCCAACTCTCTCTTTCAAACCAAATCCATTCTTCCAACCCACCCTGTCTTGCCTTCCTCCACCACCCAATGCTACTCCGTTCCCGGGTCAAGGCCCAAGCCTAGGCCCATCCAATCCGTTCAAGCAGCCGACAACTCCGTCAATGTAGTAACCGACGGCAAACAGCAGCAACCGAGGCACGAGGCCAAGTGGGCCGTAGACAGCTGGAAGTCCAAAAAGGCTCTCCAGCTCCCGGAATACCCGAACCAAGAGAAGCTCCGGGCGGTGCTCAAGAGCCTCGAAGCGTTCCCTCCCATCGTCTTCGCCGGAGAGGCTCGCAACCTTGAGGAGCGCCTCGCCGCCGCCGCCGTGGGGAACGCGTTCCTACTCCAGGGCGGAGACTGCGCCGAGAGCTTCAAGGAGTTTAATGCCAACAACATCCGCGACACCTTCAGAATCCTCCTCCAGATGAGTGTGGTTATGATGTTCGGTGGCCAGATGCCCGTTATTAAGGTGGGACGTATGGCGGGTCAGTTCGCGAAACCGAGACCGGAGCAGTTGGAGGAGAAGAACGGAGTGAAACTCCCCAGTTACAGAGGCGACAACGTGAACGGAGATGCCTTTGAAGAGAAAGCCAGAATTCCAGATCCTGAAAGGATGATTAGAGCGTATAGTCAATCAGCTGCTACTCTGAATCTTCTCAGGGCATTCGCCACTGGAGGCTACGCCGCTATGCAAAGGGTTGGTCAATGGAATTTGGACTTCACTGAGCACAGCGAACAAGGAGACAGGTATCTAGATTTTGCACACCGAGTGGATGAGGCCCTTGGTTTCATGGCTGCTGCAGGCCTCACGGTGGAGCATCCTATAATGAAAACAACTGAGTTCTGGACATCACATGAATGTCTGTTATTGCCATATGAACAATCACTCACCAGGTTGGATTCAACTTCTGGTCTCTACTATGACTGCTCCGCTCATATGCTTTGGGTTGGGGAACGGACCAGGCAGCTGGACGGTGCTCATGTTGAGTTTCTAAGAGGAGTTGCCAATCCTCTCGGAATCAAGGTAAGTGATAAGATGGATCCAAATGAACTCGTTAGACTGATCAACATTTTGAACCCCCAAAACAAATCCGGAAGAATAACCGTGATCACGAGGATGGGAGCTGAAAATATGAGAGTCAAGCTTCCACATCTGATCAGGGCAGTACGCAGAGCTGGACATACTGTAACTTGGGTCAGTGATCCTATGCATGGAAACACCATAAAGGCTCCGTGTGGACTCAAAACTCGCCCCTTTGATGCAATCAGGGCGGAGGTGAAAGCATTCTTCGACGTGCATGAACAGGAAGGAAGCCACCCAGGTGGGGTTCATCTAGAGATGACGGGTCAGAATGTGACTGAGTGCATTGGTGGGTCGAGAACTGTTACCTTTGATGATCTGGGTTCACGTTACCATACACACTGTGATCCCAGGCTTAATGCTTCGCAATCTCTTGAGCTTGCTTTCATAATTTCTGAACGCCTCCGAAAGCGTAGGATCGGATCGGATCGCGGCAGCATCTTTTCTCTGTAG 1572 0.521 MATAASNSLFQTKSILPTHPVLPSSTTQCYSVPGSRPKPRPIQSVQAADNSVNVVTDGKQQQPRHEAKWAVDSWKSKKALQLPEYPNQEKLRAVLKSLEAFPPIVFAGEARNLEERLAAAAVGNAFLLQGGDCAESFKEFNANNIRDTFRILLQMSVVMMFGGQMPVIKVGRMAGQFAKPRPEQLEEKNGVKLPSYRGDNVNGDAFEEKARIPDPERMIRAYSQSAATLNLLRAFATGGYAAMQRVGQWNLDFTEHSEQGDRYLDFAHRVDEALGFMAAAGLTVEHPIMKTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVRLINILNPQNKSGRITVITRMGAENMRVKLPHLIRAVRRAGHTVTWVSDPMHGNTIKAPCGLKTRPFDAIRAEVKAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGSRYHTHCDPRLNASQSLELAFIISERLRKRRIGSDRGSIFSL 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02499 523 Gene3D Aldolase class I 255 510 IPR013785 -
Vimu10g02499 523 Pfam Class-II DAHP synthetase family 69 505 IPR002480 GO:0003849|GO:0009073
Vimu10g02499 523 MobiDBLite consensus disorder prediction 23 44 - -
Vimu10g02499 523 NCBIfam 3-deoxy-7-phosphoheptulonate synthase class II 69 512 IPR002480 GO:0003849|GO:0009073
Vimu10g02499 523 SUPERFAMILY Aldolase 60 509 - -
Vimu10g02499 523 FunFam Phospho-2-dehydro-3-deoxyheptonate aldolase 258 510 - -
Vimu10g02499 523 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2 42 515 IPR002480 GO:0003849|GO:0009073
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02499 Vimu-Chr10 36204467 36208189 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02499 K01626 - gmx:100797019 858.596
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02499 10 36204467 36208189 Vimu10g02499 10 36204467 36208189 ECH
Vimu1g01902 1 24012898 24017019 Vimu10g02499 10 36204467 36208189 PCT