Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01862 ATGGCATTGTTTAGTTTAGTGTTCATAGTTGTTCTGGCTATTACTGGATCTTTTTGGTGGACTTTATCGATTTCATCCTCGTCAAGAGGTCACATTTACCATGGTTATAGAAGGCTTCAAGAGAAGCTAGTCTCAGACCTTTTGGATATTGGTGAGTTTTCTCGCGGTCCGTTGAGGTTGAAGGAATCGGAATTCTGTCCTCAGGAATTGGAAAACTTTGTTCCTTGCTACAATGTTTCTGAGAATGTGGAATTGGACGTTCGAACTATACTAGACATAGGTTGTGGCTATGGTAGCTTTGGAGCACATCTCTTTGACAGTCAGCTTTTAACTATGTGCATTGCAAACTATGAGCCTTCTGGCAGTCAAGTTCAGCTTACTCTCGAGAGGGGTCTTCCTGCTATGATTGCTTCTTTCACTTCGAAGCAGCTGCCATTTCCATCTCTATCCTTTGATATGTTACATTGTGCCAGATGTGGCATTGATTGGGACCAGAAAGATGGCATGCTCCTGATTGAAGCAGATAGACTTTTAAAACCGGGTGGGTACTTTGTTTGGACATCACCACTAACAAATGCTCGTGACAAAGAGAATCAGAAAAGATGGAAGTTTATACAGGATTTCACATTAACTCTTTGCTGGGAACTGCTTTCGCAACAAGAGGAAACGGTAGTATGGAAGAAAACCAGTAAAAAAGGTTGCTATGCTTCAAGAAAGTCAGGTTCTGGCCCTTCTTTGTGTGGTAGAGGTATTGACGTGGAGACTCCACATTATCGAGAACTGCAAAACTGCATAGGAGGAATGCAGAGCGCTCGTTGGATTCCAATTGAGAAAAGGGAAAGATGGCCTTCTCGTGCTAACTTGAACAAGAACGAGTTAGCTATATACGGGTTGCAGCCTGATGAACTTACTGAGGACTCTGACAGCTGGAAAACCGCAGTCCAGAATTATTGGTCTCTCCTGTCACCTTTGATATTTTCTGATCATCCAAAGAGGCCGGGCGACGAGGACCCTTCACCCCCTTACAACATGCTCAGAAACGTGTTGGACATGAATGCTCATTTTGGTGGCTTTAACTCTGCATTGCTGCAAGCTAGAAAGTGTGAGGCTTTTCCGACATACCCTAGAACCTATGACTTGGTGCATGCAGCAGGATTTCTATCCCTTGAAACTGAGCAGCACAGGTGTACCATGGTTGACATGTTCCTTGAAATTGACAGAATACTTCGCCCAGAGGGTTGGATTATAATTCGTGACACAGTTCCCTTAATAGAATCAGCCAGAGCTCTAACAGCACAGCTGAAGTGGGATGCAAGAGTGGTAGAAATTGAAAGTGACAGTGATCAGAGACTCCTGATCTGCCAGAAACCTTTCTTTAAGAGACAGGCAAGCTAA 1395 0.438 MALFSLVFIVVLAITGSFWWTLSISSSSRGHIYHGYRRLQEKLVSDLLDIGEFSRGPLRLKESEFCPQELENFVPCYNVSENVELDVRTILDIGCGYGSFGAHLFDSQLLTMCIANYEPSGSQVQLTLERGLPAMIASFTSKQLPFPSLSFDMLHCARCGIDWDQKDGMLLIEADRLLKPGGYFVWTSPLTNARDKENQKRWKFIQDFTLTLCWELLSQQEETVVWKKTSKKGCYASRKSGSGPSLCGRGIDVETPHYRELQNCIGGMQSARWIPIEKRERWPSRANLNKNELAIYGLQPDELTEDSDSWKTAVQNYWSLLSPLIFSDHPKRPGDEDPSPPYNMLRNVLDMNAHFGGFNSALLQARKCEAFPTYPRTYDLVHAAGFLSLETEQHRCTMVDMFLEIDRILRPEGWIIIRDTVPLIESARALTAQLKWDARVVEIESDSDQRLLICQKPFFKRQAS 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01862 464 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 82 364 IPR004159 GO:0008168
Vimu1g01862 464 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 368 456 IPR004159 GO:0008168
Vimu1g01862 464 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 84 216 IPR029063 -
Vimu1g01862 464 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 79 364 IPR004159 GO:0008168
Vimu1g01862 464 FunFam probable pectin methyltransferase QUA2 62 229 - -
Vimu1g01862 464 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 302 423 IPR029063 -
Vimu1g01862 464 Gene3D Vaccinia Virus protein VP39 74 240 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01862 Vimu-Chr1 22956382 22960389 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01862 K23870 - gmx:100805992 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01862 1 22956382 22960389 Vimu1g01862 1 22956382 22960389 ECH
Vimu1g01862 1 22956382 22960389 Vimu10g02506 10 36308921 36310890 PCT