Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02506 ATGTCCAGGCCTCTACACAGAGGGGTACCTGTTCGGATCCCTGAAAGAAACAATGACTCGTGGGACTCCCAATCCAAAGATAAGACAGAAAAGGAAGGTTTTGATAGAAGATTTTCCTCTGCTCACCCCTCACCCTTGAGGTCTCCCTTTAGGTTGTTATCAGATAATTCTAATTCCATGTTAGGTATCACCGAGAATGGTTTATCATCTGACCCCTACATTATTGGCACTCCAAGAAATAGGCATAAGTTGATTCTTTTTTTCTTGAAGTTTAGTTTAGTGTTCGTAGTTATTCTTGCTCTTGCGGGGTCTTTTTGGTGGACCATCTCAATTTCAACTGCGTCAAGGGGTCACATTTATCATGGTTATAAAAGACTCCATGAGCAACTTGTATCGGACCTGTTGGATATAGGGGAGATATCTTATGCTCCCTCAAGGCTGAAAGAATTGGAATTTTGTTATAAGGAGTTTGAAAATTATGTTCCTTGCTTTAATGTTTCTGACAATCTAGCTCTTGGTTTTTCTGATGGCAATGAGTTTGACCGGCAATGTGGCCATGAGCTCAGGCAAGATTGTTTATTACTTTCACCACCCAATTACAAAATTCCTCTTAGGTGGCCTACTGGAAGGGATATTATCTGGGTTGCTAATGTTAAACTCACTGCAGAGGAGGTTCTTTCGTCTGGAAGCTTAACCAAAAGGATGATGATGCTTGATGAAGAGCAAATTTCCTTTCGCTCAGCCTCTCTTATGTTTGGTGGTGTGGAAGACTATTCACATCAAATCGCTGAAATGATTGGGCTCAGAAATGAATCCAACTTCGTAAAAGCAGGGTTCTTAAAGTTTGTTTATGATATTCCATTGATTGAACATGTTGAGATTCTGAATATACAGGTTAGAACAATACTGGATATTGACTGTGGTTACGGTAGCTTTGGAGCACACCTCTTTCAGAATCAACTTTTAACTATGTGCATTGCAAGCTATGAGCCTTCTGGCAGTCAAGTTCAGCTTACACTTGAGAGGGGTCTTCCTGCTATGGTTGCTTCTTTCAATTCAAAACAATTGCCATATCCATCTCTCTCCTTTGACATGTTGCATTGTGCCAGATGTGGCATCGATTGGGACCGAAAGGGTATCTTTGAAAACCTACCTCCTACTATTTTCTATAAGTACTTATTCATTCTGCTTCTCAAGTTATACCTTTCCATTTTTGCATATTCGGGAATTGAACATTGA 1239 0.4019 MSRPLHRGVPVRIPERNNDSWDSQSKDKTEKEGFDRRFSSAHPSPLRSPFRLLSDNSNSMLGITENGLSSDPYIIGTPRNRHKLILFFLKFSLVFVVILALAGSFWWTISISTASRGHIYHGYKRLHEQLVSDLLDIGEISYAPSRLKELEFCYKEFENYVPCFNVSDNLALGFSDGNEFDRQCGHELRQDCLLLSPPNYKIPLRWPTGRDIIWVANVKLTAEEVLSSGSLTKRMMMLDEEQISFRSASLMFGGVEDYSHQIAEMIGLRNESNFVKAGFLKFVYDIPLIEHVEILNIQVRTILDIDCGYGSFGAHLFQNQLLTMCIASYEPSGSQVQLTLERGLPAMVASFNSKQLPYPSLSFDMLHCARCGIDWDRKGIFENLPPTIFYKYLFILLLKLYLSIFAYSGIEH 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02506 412 MobiDBLite consensus disorder prediction 1 42 - -
Vimu10g02506 412 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 159 379 IPR004159 GO:0008168
Vimu10g02506 412 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 197 375 IPR029063 -
Vimu10g02506 412 MobiDBLite consensus disorder prediction 9 38 - -
Vimu10g02506 412 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 41 379 IPR004159 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02506 Vimu-Chr10 36308921 36310890 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02506 K23870 - gmx:100795712 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02506 10 36308921 36310890 Vimu10g02506 10 36308921 36310890 ECH
Vimu1g01862 1 22956382 22960389 Vimu10g02506 10 36308921 36310890 PCT