Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01852 ATGTCAGGAGGAGGATGCAATATAGTGTGGTTTAGGAGAGATCTGAGGGTAGAGGATAATCCTGCACTGGCTGCCGGAGTTAGAGCAGGAGCTGTTATTGCAGTTTTCATATGGGCTCCAGAAGAAGAGGGTCAATACTACCCTGGGAGGGTTTCTAGGTGGTGGCTCAAACAAAGTTTGGCTCATCTTGATTCCTCTTTGAGAAGCCTTGGCACTCCCCTTATCACCAAGCGTTCCACTAATAGTGTTTCTTCCCTATTGGAGGTCGTTAAGTCCACTGGTGCTACTCAACTCTTTTTCAACCATTTATATGATCCATTGTCACTTGTGAGGGATCACCGAGCAAAGGAGGTTCTGACTGCACAAGGCATTACCGTCCGTTCATTCAACTCAGACTTATTGTACGAACCATGGGATGTGAATGACGCTCATGGCCAACCATTCACAACTTTTTCTGCTTTTTGGGAAAGATGCCTCAGCATGCCTTATGACCCACAAGCACCTCTTCTCCCACCTAAAAGAATTATTCCAGGTGATGCTTCAAGGTGCCCTTGTGATACATTGATGTTTGAAGACGATTTAGAGAAGGCAAGCAATGCGCTTCTTTCTCGAGCATGGTCACCGGGGTGGAGCAATGCTGACAAGGCATTGACGGCATTCATTAACGGTCCTCTGATTGAATACTCAAAGAATCGTAGGAAGGCTGATAGTGCCACAACCTCATTTCTCTCTCCACATTTGCACTTCGGTGAGGTGAGTGTAAAGAAAGTGTTCCATCTTGTCCGCATTAAGCAAGTGTTTTGGGCCAATGAAGGTAACAAGGCTGGTGAAGAGAGTGTGAACTTGTTTCTCAAGTCTATTGGTCTTAGAGAGTATTCAAGGTACATCAGTTTCAACCACCCCTACAGTCACGAGAGGCCCCTTCTAGGACACCTTAAGTTTTTCCCTTGGGTGGTGAATGAAGGCTACTTCAAGGCTTGGAGACAAGGCAGAACAGGGTACCCTTTGGTGGATGCTGGAATGAGAGAGTTGTGGGCAACTGGTTGGTTGCATGATCGGATACGTGTTGTGGTTTCGAGTTTCTTTGTGAAGGTGCTTCAGCTTCCTTGGAGATGGGGAATGAAGTATTTCTGGGATACCCTTTTGGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATATCTGGTACTATTCCTGATGGTCGCGAATTTGATCGAATAGATAATCCACAGTTTGAGGGGTATAAGTGTGATCCAAATGGAGAATATGTTCGACGCTGGCTTCCTGAACTTGCTAGATTACCAACTGAATGGATACACCATCCGTGGAATGCACCAGAGTATGTACTACAAGCTGCTGGAATTGAACTTGGTTCAAATTATCCTCTTCCCATTGTGGGAATAGATGCTGCAAAAGTTAGACTGCAAGAAGCACTTATACAAATGTGGCAACAAGAAGCAGCTTCAAGAGCTGCAATTGAAAATGGAACGGAGGAAGGGCTTGGAGACTCATCTGAATCAGCCCCTATTGCTTTTCCTCAAGACACGCACATGGAAGAAAGACTTGCTGAACCTGTTAGGAACAACCCACCTCATGGTACTCGGCGCTACGAGGATCAGATGGTCCCAAGTATGACTTTTTCCCATGTGAGAGTGGAAGAGGAAGAAACGTCTTCAGACCTTCGAAACACAGCAGCAGACAACAGAGCCGAAGTTCCTACAAATGTGACCACACAACAAAATAACAGAGATACAGTGAATCAAGGAGGGCTTCTGAATGTAAATAGAAACACTCGAGTACAGAATAATGCTACTGAAATGTGGCTGAGAAATGCGGCTGAAGACTCCACAGCAGAATCGTCAAGTAGTACTAGGAGAGAAAGGGATGGGGGTGTAGTTCCAGTTTGGTCTCCCCCAGCATCTAACTTCTCAGAACAATTTGTAGATGATGAAAATGGTATTGGAGCCAGTTCATCATACTTGCAGAGGCAGCATCCTCAGTCCCATCAATTGATGAACTGGACGCGGCTACCTCAGACTGGGTCATATTCTCCTCTTACCGAGTACATCAACAAACACTTAGCGAATGGCAATATTTTGGTCCTGTTGGATGATGTTTTTGGCAATGGATTATCTGCAGTAATTCAGAGCTACAACGTGGTGATTAGTATCAGGGAGATGAAGAATGCAGTCTCCCCTCATCTTTTGGGAAAAGTGGGATGGCAAACCTGTCTCTCTCTTTGGACATTGCCTATGGCAGCTATAGGATGA 2277 0.455 MSGGGCNIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGQYYPGRVSRWWLKQSLAHLDSSLRSLGTPLITKRSTNSVSSLLEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAPLLPPKRIIPGDASRCPCDTLMFEDDLEKASNALLSRAWSPGWSNADKALTAFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGREFDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPEYVLQAAGIELGSNYPLPIVGIDAAKVRLQEALIQMWQQEAASRAAIENGTEEGLGDSSESAPIAFPQDTHMEERLAEPVRNNPPHGTRRYEDQMVPSMTFSHVRVEEEETSSDLRNTAADNRAEVPTNVTTQQNNRDTVNQGGLLNVNRNTRVQNNATEMWLRNAAEDSTAESSSSTRRERDGGVVPVWSPPASNFSEQFVDDENGIGASSSYLQRQHPQSHQLMNWTRLPQTGSYSPLTEYINKHLANGNILVLLDDVFGNGLSAVIQSYNVVISIREMKNAVSPHLLGKVGWQTCLSLWTLPMAAIG 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01852 758 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Vimu1g01852 758 MobiDBLite consensus disorder prediction 555 598 - -
Vimu1g01852 758 Gene3D HUPs 8 206 IPR014729 -
Vimu1g01852 758 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 192 488 IPR036134 -
Vimu1g01852 758 Gene3D - 134 293 - -
Vimu1g01852 758 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Vimu1g01852 758 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 178 IPR036155 -
Vimu1g01852 758 FunFam Cryptochrome 1 8 148 - -
Vimu1g01852 758 Pfam DNA photolyase 8 163 IPR006050 -
Vimu1g01852 758 Pfam Blue/Ultraviolet sensing protein C terminal 510 627 IPR020978 -
Vimu1g01852 758 PRINTS DNA photolyase signature 352 370 IPR002081 -
Vimu1g01852 758 PRINTS DNA photolyase signature 143 159 IPR002081 -
Vimu1g01852 758 PRINTS DNA photolyase signature 332 348 IPR002081 -
Vimu1g01852 758 PRINTS DNA photolyase signature 391 405 IPR002081 -
Vimu1g01852 758 FunFam Deoxyribodipyrimidine photo-lyase 301 490 - -
Vimu1g01852 758 MobiDBLite consensus disorder prediction 565 598 - -
Vimu1g01852 758 PANTHER CRYPTOCHROME 6 490 IPR002081 -
Vimu1g01852 758 Pfam FAD binding domain of DNA photolyase 283 480 IPR005101 -
Vimu1g01852 758 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Vimu1g01852 758 NCBIfam cryptochrome photoreceptor 7 481 IPR014134 GO:0009785|GO:0009882
Vimu1g01852 758 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Vimu1g01852 758 MobiDBLite consensus disorder prediction 613 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01852 Vimu-Chr1 22710658 22717952 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01852 K12118 - gmx:100815428 1306.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01852 1 22710658 22717952 Vimu1g01852 1 22710658 22717952 ECH
Vimu1g01852 1 22710658 22717952 Vimu10g02513 10 36376693 36383782 PCT