Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02513 ATGAGAGGTGGTGGTGGTGGTGGTGGATGCAGCATAGTTTGGTTCAGAAGAGATCTGAGGGTGGAAGACAACCCTGCACTGGCGGCAGGAGTAAGAGCTGGAGCCGTGGTTGCAGTTTTCATCTGGGCACCCGAAGAAGAAGGCCAATACTACCCCGGCAGAGTCTCCAGGTGGTGGCTCAAACAAAGCTTGGTTCATCTTGATTCTTCTCTCAGGAACCTTGGCACCCGTCTCGTCACCAAGCGATCCACTGATACTGTTTCTTCTCTCCTCGACGTTGTTAAATCCACTGGAGCCACTCAACTCTTTTTTAATCATTTATATGATCCCCTGTCGCTTGTAAGGGATCACCGAGCAAAAGAGGTTCTGAATGCTCAGGGCATAACAGTACGTTCCTTCAACGCGGATTTACTGTATGAACCGTGGGATGTGAATGATGTCCATGGTCGACCGTTCACAACTTTTGCGGCTTTTTGGGACAGATGTCTTAGCATGCCTTATGACCCAGACTCACCTCTTCTTCCACCTAAAAGGATTATTCCAGGTGATGTGTCGAGATGCCCCAGTGACACATTGGTGTTTGAAGATGAATCAGAGAAGGCAAGCAATGCACTTCTTGCTAGAGCATGGTCACCGGGGTGGAGCAATGCTAACAAGGCATTGACAGCATTCATAAATGGTCCACTGATAGAGTACTCAATAAATTGCAGAAAGGCTGACAGTGCCACTACCTCACTTCTCTCACCCCATTTGCATTTTGGTGAGCTGAGTGTGAAGAAGGTCTTCCATCTTGTCCGCATCAAACAACTTCTGTGGGCCAACGAAGGAAACAAGGCCAGTGAAGAGAGTGTGAACTTGTTCCTTAAATCTATTGGTCTCAGAGAATATTCGAGGTACATTAGTTTCAACCACCCCTACAGTCATGAAAGGCCTCTTCTAGGCCACCTTAAGTTCTTTCCTTGGGTTGTAAATGAGGGTTATTTTAAGGTATGGAGACAAGGAAGAACTGGGTACCCTTTGGTGGATGCAGGGATGAGGGAGTTGTGGGCCACTGGTTGGCTGCATGATCGGATACGTGTTGTAGTTTCCAGTTTCTTTGTGAAGGTTCTGCAGCTTCCTTGGAGATGGGGAATGAAATATTTCTGGGACACCCTTTTGGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATATCTGGCACACTCCCTGATGGTCGTCAATTTGACCGAATAGATCATCCACAGTTTGAGGGCTATAAATTCGACCCAAATGGAGAATATGTGCGACGCTGGCTTCCAGAACTTGCAAGGTTACCTACTGAGTGGATTCATCATCCTTGGAATGCACCAGAATCAGTGCTCCAAGCTGCTGGAATTGAACTAGGAACCAACTACCCTCTTCCAATTGTGGGAATAGATGCAGCAAAAACTAGGTTACAAGAGGCACTATCAGAAATGTGGCAACTAGAGGCTGCTTCAAGAGCTGCAATGGAAAACGGAACTGAGGAAGGACTTGGAGACTCCTCTGAATCAATTCCTGCTGCGTTTCCTCAAGACACGCAAATGGAGGAAACTCATGAACCTGTTATGAACAATCCCGTTCCTGTTGGTAGGCGTTACCTGGATCAGATGGTTCCAAGCATCACTTCCACCCTTCTGAGAGTAGAAGAGGAAGAAACTACTTCTGATCTTCGAAACTCAGCAGAAGAGAGCAGCAGAGCTGAAGTGCCAATAAATGTAGATACACAACAGAATGCAGGAGTTACATTGAACGAACGGATCTTGCAGACTGCTCACAGGAATACACAAGAACAAAACAATACTACAATGGAGCTGAGAAACGTAGCTGAAGATTCTAGCATAGAATCTTCAAGTGGTACCAGGAGAGAACGGGATGGAGGTGTAGTTCCAGTATGGTCTCCCCCAGCTTCCAGTTACTCAGAACAATTTGTAGGAGATGAAAATGGTATCACAAGTGGTTCCTCGTACTTGCAAAGGCATCCTCAGTCTCACCAATTACTGAATTGTAGGCAGCTACCTCAGACCGGGTAA 2058 0.467 MRGGGGGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFIWAPEEEGQYYPGRVSRWWLKQSLVHLDSSLRNLGTRLVTKRSTDTVSSLLDVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLNAQGITVRSFNADLLYEPWDVNDVHGRPFTTFAAFWDRCLSMPYDPDSPLLPPKRIIPGDVSRCPSDTLVFEDESEKASNALLARAWSPGWSNANKALTAFINGPLIEYSINCRKADSATTSLLSPHLHFGELSVKKVFHLVRIKQLLWANEGNKASEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRQFDRIDHPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGTNYPLPIVGIDAAKTRLQEALSEMWQLEAASRAAMENGTEEGLGDSSESIPAAFPQDTQMEETHEPVMNNPVPVGRRYLDQMVPSITSTLLRVEEEETTSDLRNSAEESSRAEVPINVDTQQNAGVTLNERILQTAHRNTQEQNNTTMELRNVAEDSSIESSSGTRRERDGGVVPVWSPPASSYSEQFVGDENGITSGSSYLQRHPQSHQLLNCRQLPQTG 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02513 685 MobiDBLite consensus disorder prediction 644 685 - -
Vimu10g02513 685 Pfam DNA photolyase 11 166 IPR006050 -
Vimu10g02513 685 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 198 492 IPR036134 -
Vimu10g02513 685 FunFam Deoxyribodipyrimidine photo-lyase 305 494 - -
Vimu10g02513 685 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 11 182 IPR036155 -
Vimu10g02513 685 PRINTS DNA photolyase signature 356 374 IPR002081 -
Vimu10g02513 685 PRINTS DNA photolyase signature 336 352 IPR002081 -
Vimu10g02513 685 PRINTS DNA photolyase signature 395 409 IPR002081 -
Vimu10g02513 685 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 9 138 IPR006050 -
Vimu10g02513 685 Coils Coil 474 494 - -
Vimu10g02513 685 ProSitePatterns DNA photolyases class 1 signature 1. 336 348 IPR018394 -
Vimu10g02513 685 NCBIfam cryptochrome photoreceptor 10 486 IPR014134 GO:0009785|GO:0009882
Vimu10g02513 685 FunFam Cryptochrome 1 12 149 - -
Vimu10g02513 685 Pfam FAD binding domain of DNA photolyase 287 485 IPR005101 -
Vimu10g02513 685 MobiDBLite consensus disorder prediction 601 685 - -
Vimu10g02513 685 MobiDBLite consensus disorder prediction 601 624 - -
Vimu10g02513 685 MobiDBLite consensus disorder prediction 558 572 - -
Vimu10g02513 685 PANTHER CRYPTOCHROME 10 494 IPR002081 -
Vimu10g02513 685 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 305 506 - -
Vimu10g02513 685 Pfam Blue/Ultraviolet sensing protein C terminal 515 630 IPR020978 -
Vimu10g02513 685 Gene3D HUPs 12 210 IPR014729 -
Vimu10g02513 685 MobiDBLite consensus disorder prediction 555 585 - -
Vimu10g02513 685 Gene3D - 138 297 - -
Vimu10g02513 685 ProSitePatterns DNA photolyases class 1 signature 2. 356 375 IPR018394 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02513 Vimu-Chr10 36376693 36383782 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02513 K12118 - gmx:100797839 1282.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02513 10 36376693 36383782 Vimu10g02513 10 36376693 36383782 ECH
Vimu1g01852 1 22710658 22717952 Vimu10g02513 10 36376693 36383782 PCT