Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01842 ATGCCCGTAATTCACAAATTAAAGGCAACGCCAGTGTACTTGTCGGAAATCGCTCCACCCAGATGGCGAGGCGCGTTCAACACAGCCTTCCAGTTCTTCATCGGAATCGGCGTGGTGGCGGCGAACTTCATAAACTACGGAACGGCGAGGGTTCCATGGGGGTGGCGCGTGTCACTGGGCCTCGCCACGGTCCCGGCAATCATCATGACAATTGGTGCCTTGCTAATCCCGGACACTCCCAGCAGCCTAATAGAACGCGACCACATAGATGAAGCCCGAAATGCCCTTCGCAAAGTTCGGGGCCCCGCCGTTGACGTGGAACCCGAACTCCAACAACTCATCCAATCGTCGCAGGTTTCCAAAGCCATTGAAAAGGAAAGTGTTAGGACCATTTTTGAGGAACAATATCGGCCTCAGTTGGTTATGGCGTTCGCTATTCCGCTGTCCCAGCAGCTTACGGGGATCAACATTGTGGCCTTCTATGCTCCTAACCTCTTTCAGTCTGTGGGCTTAGGCAATGACTCTGCGTTGCTTTCCGCCGTTATACTCGGACTCGTCAACCTCTCTTCCATCCTCGTCTCAACTGCGGTTGTCGATCGCTTTGGCAGAAGATTCTTGTTCATAGCCGGTGGCCTTCAAATGCTTCTCTGCATGCTTGCGGTGGCTATTGTGCTGGCAGTGGCGAGTGGTGTTCATGGTACAGAGAACATTTCAAAGGACAACACCATATTGGTACTAGTGTTGTTTTGCTTCTACGCTGCAGGTTTTGGTTGGTCCTGGGGCCCTCTTTGCTGGCTAATTCCAAGTGAGATTTTTCCCTTAAAGATAAGATCTACTGGACAAAGTATAGCTGTTGCAGTGCAATTCTTCACCGTTCATCACCATCTTTGTCATACTGTTCTTGCCCGAGACCAAAGGGATTCCTTTGGATTCAATGTATGCAATTTGGAGCAAACACTGGTATTGGCGAAGTTCGTCACTAAGTGCTATATTCCGTCGGAAATCCATCTTATCGACAGCTTACCGACGGTTTCAATTCCGTCGGAAAAAGCTTTGTCGGAAACCATTACCGAAGAACATTACGTGGGTAATTACCAAAGGATAAATCCTTCGGTAACGTCGTCTTTATAG 1131 0.4943 MPVIHKLKATPVYLSEIAPPRWRGAFNTAFQFFIGIGVVAANFINYGTARVPWGWRVSLGLATVPAIIMTIGALLIPDTPSSLIERDHIDEARNALRKVRGPAVDVEPELQQLIQSSQVSKAIEKESVRTIFEEQYRPQLVMAFAIPLSQQLTGINIVAFYAPNLFQSVGLGNDSALLSAVILGLVNLSSILVSTAVVDRFGRRFLFIAGGLQMLLCMLAVAIVLAVASGVHGTENISKDNTILVLVLFCFYAAGFGWSWGPLCWLIPSEIFPLKIRSTGQSIAVAVQFFTVHHHLCHTVLARDQRDSFGFNVCNLEQTLVLAKFVTKCYIPSEIHLIDSLPTVSIPSEKALSETITEEHYVGNYQRINPSVTSSL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01842 376 Pfam Sugar (and other) transporter 10 290 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu1g01842 376 PRINTS Sugar transporter signature 269 281 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu1g01842 376 PRINTS Sugar transporter signature 150 160 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu1g01842 376 PRINTS Sugar transporter signature 246 267 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu1g01842 376 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 8 291 IPR045262 GO:0015144
Vimu1g01842 376 Gene3D MFS general substrate transporter like domains 5 297 IPR036259 -
Vimu1g01842 376 SUPERFAMILY MFS general substrate transporter 10 290 IPR036259 -
Vimu1g01842 376 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 336 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01842 Vimu-Chr1 22255046 22257093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01842 8 302 Organic Solute Cotransporters AT1G34580 59.667 1.41e-116 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01842 K24193 - pvu:PHAVU_008G173200g 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01842 1 22255046 22257093 Vimu1g01842 1 22255046 22257093 ECH
Vimu1g01842 1 22255046 22257093 Vimu10g02523 10 36480392 36485092 PCT