Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02523 ATGGTGCCGTTTCTGGAGAAATTCTTTCCAGACATATTAAGAAAGATTGGTGGGAGTGAAGTGAACATGTACTGTGTTTATGACAGTCAAGTGTTGACATTGTTCACATCTTCTCTGTATCTTGCGGGGTTAGTATCATCTCTGGTAGCTAGTCGATTAACAACAGCAATAGGTCGAAGAAACACCATCTTATTAGGTGGTGTAGTCTTTCTTCTTGGTGGTTCCCTTAATGCAGGTGCAGAGAATATTGTTATGCTTATTCTCGGTCGTGTCTTACTTGGATTTGGAGTCGGTTTCACTAATCAAGCAGCACCATTGTACCTTTCTGAAATTGCTCCACCGAAATGGAGAGGAGCATTCAACACAGGCTTCCAATTCTTTTTAGGAGTTGGAACAGTGGTCGCTGGCTGCATAAACTATGCAACTGCGAAGCACACGTGGGGGTGGCGAGTTTCGCTTGGCATCGCTGTGGTGCCTGCAGCAGTTATGACAATCGGTGCCTTGCTTATAACTGACACTCCCAGTAGCTTGGTTGAACGTGGTAAAATAGAAGAAGCCAGAAGAGCCTTGCGGAAGGCCAGAGGATCCTCCTTTGATGTTGAACCTGAATTGGACGAACTCATTAAGTGGTCACAGATTGCAAAATCTGTAGACAAGGAGCCCTTTAAAACCATATTTGAGAGGAAATATCGACCCCATTTGGTCATGGCAATTGCTATCCCGTTTTTTCAGCAAATGACAGGGATTAACATTGTGGCATTCTATGCTCCTAACCTGTTTCAATCAGTGGGTTTGGGACATGATGCAGCTTTACTTTCTGCCATTATACTCGGAGCAGTCAACCTTGCCTCTCTCCTCGTCTCAACTGCTGTTGTTGATCGCTTTGGTCGAAGGTTCTTGTTCATATCTGGTGGCATTCTCATGCTTGTTTGTCAGATTGCGGTGTCAGTTATGCTGGCAGTGGTAACTGGTGTTCATGGTACAAAGGACTTATCAAAAGGCAACGCAATTGGAGTGTTGGTGCTGCTTTGTTTCTACACTGCTGGTTTTGGCTGGTCATGGGGACCTCTAACGTGGCTAATTCCGAGTGAGATTTTTCCGTTAAAAATCAGAACCACTGGACAAAGCATAGCTGTCGCGGTGCAGTTTATTACCATATTTGTATTGTCCCAGACATTCTTGACAATGCTGTGCCACTTTAAGTTCGCTTCATTCGTGTTCTATGCGGGTTGGATTATAGTTATGACAATCTTTGTTATACTTTTCGTTCCAGAAACAAAGGGAATTCCGTTGGAATCAATGTACACCATATGGGGAAAACACTGGTTCTGGCGCCGGTTTTTAAAGGAAGTTACTCAACAAAATCTTCCATGA 1374 0.4389 MVPFLEKFFPDILRKIGGSEVNMYCVYDSQVLTLFTSSLYLAGLVSSLVASRLTTAIGRRNTILLGGVVFLLGGSLNAGAENIVMLILGRVLLGFGVGFTNQAAPLYLSEIAPPKWRGAFNTGFQFFLGVGTVVAGCINYATAKHTWGWRVSLGIAVVPAAVMTIGALLITDTPSSLVERGKIEEARRALRKARGSSFDVEPELDELIKWSQIAKSVDKEPFKTIFERKYRPHLVMAIAIPFFQQMTGINIVAFYAPNLFQSVGLGHDAALLSAIILGAVNLASLLVSTAVVDRFGRRFLFISGGILMLVCQIAVSVMLAVVTGVHGTKDLSKGNAIGVLVLLCFYTAGFGWSWGPLTWLIPSEIFPLKIRTTGQSIAVAVQFITIFVLSQTFLTMLCHFKFASFVFYAGWIIVMTIFVILFVPETKGIPLESMYTIWGKHWFWRRFLKEVTQQNLP 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02523 457 ProSitePatterns Sugar transport proteins signature 2. 92 117 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu10g02523 457 PRINTS Sugar transporter signature 340 361 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu10g02523 457 PRINTS Sugar transporter signature 87 106 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu10g02523 457 PRINTS Sugar transporter signature 363 375 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu10g02523 457 PRINTS Sugar transporter signature 244 254 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu10g02523 457 FunFam Sugar transport protein 13 1 441 - -
Vimu10g02523 457 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 427 IPR020846 GO:0022857
Vimu10g02523 457 Gene3D MFS general substrate transporter like domains 1 442 IPR036259 -
Vimu10g02523 457 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 1 449 IPR045262 GO:0015144
Vimu10g02523 457 CDD MFS_STP 1 425 IPR044778 GO:0015145|GO:0015749
Vimu10g02523 457 SUPERFAMILY MFS general substrate transporter 28 433 IPR036259 -
Vimu10g02523 457 Pfam Sugar (and other) transporter 28 438 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu10g02523 457 NCBIfam sugar porter family MFS transporter 22 433 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02523 Vimu-Chr10 36480392 36485092 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02523 1 452 Organic Solute Cotransporters AT1G34580 63.956 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02523 K24193 - gmx:100817162 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01842 1 22255046 22257093 Vimu10g02523 10 36480392 36485092 PCT