Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01836 ATGGAGATCCCAAGTGCCTCATCGAAGCTGCATTCCCAGTTCAAAGGGAACTACGTAAACCTTTCCATGCAAAAGTTTAGCAGTCACGTGGTTGAAAAATGCCTCATGCATATTTCAGAGAGCAGGTCCAGAATAGTCCAAGAAATGTTATCTTTTCCTCACTTTGAGCGCTTCCTACCAGACCCATATGCCAACTATGTTGTTCAACGTGCTCTTGGAGTCACCAAGGGTTCTCTGCATACATCTCTGGTGGAAGCAGTTCGACCCCACAAAATCTTGCGCACCAACCCTTATTGCAAAAGGATTTTCTCAAGGAACCTACTTAATAAGTGA 333 0.4444 MEIPSASSKLHSQFKGNYVNLSMQKFSSHVVEKCLMHISESRSRIVQEMLSFPHFERFLPDPYANYVVQRALGVTKGSLHTSLVEAVRPHKILRTNPYCKRIFSRNLLNK 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01836 110 Pfam Pumilio-family RNA binding repeat 61 72 IPR001313 GO:0003723
Vimu1g01836 110 Pfam Pumilio-family RNA binding repeat 17 49 IPR001313 GO:0003723
Vimu1g01836 110 SUPERFAMILY ARM repeat 8 104 IPR016024 -
Vimu1g01836 110 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 1 110 IPR033133 GO:0003723
Vimu1g01836 110 SMART pum_5 13 47 IPR001313 GO:0003723
Vimu1g01836 110 SMART pum_5 50 85 IPR001313 GO:0003723
Vimu1g01836 110 ProSiteProfiles Pumilio RNA-binding repeat profile. 13 51 IPR001313 GO:0003723
Vimu1g01836 110 Gene3D - 1 106 IPR011989 -
Vimu1g01836 110 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 4 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01836 Vimu-Chr1 22201466 22202320 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01836 - - pvu:PHAVU_008G173000g 208.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01836 1 22201466 22202320 Vimu1g01836 1 22201466 22202320 ECH
Vimu1g01836 1 22201466 22202320 Vimu10g02529 10 36512708 36515494 PCT