Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02529 ATGGACGCACACATCATGTCAGAGGACAGGAGAGCAACAGAGGAAGGAGGAGAAACGAGGTTGGTTGGAAATCCCAATGTTTCCCATCCCACAGCGGCATCCACACCACTATCCTGTCTCCGCGTCCTTCACCCTGACCACGTGGCTGTTGGGTCCCCCGTTACCAGGGTTCCTCCATATTCAGCACCACCTCCTTCTCCAAAATTCTGGGTGGACCATGACCCTTCCACTCTCACTCACACCCACACCAACTGGGCCCATGATTCTTCACTGATTTCTGATTTCTCCAAAATGAATCTCCTCGATCAAATCCAAACCGATGTGGACCCCTGTCCTTATTTTAATCAACCAGGAACCCTTCCAAACCCGTATGATTCTGGTTTTAATGAAACAGAAAACCTTCCATACCATCACCATGTCAACAATGCCCGCTTGTTCAATGAACAAGGAATTCTCCCCTATCATGTTAACAATGCTGGGTTGTTCACTGAATCCGGAACCCTCCTCCCCTATCACCACCATCTTAACAACGCTGAACTTTTCGATAAAGGTCACACTTTTGACACCCCAGATGATCACGGTAACCTTCTGTATCATCATCCCGTGGACCAGAGGAGGAATCAGTTACAGGCCACGAGTAGTGGCAACTATCCCATTTTTCGTGATCGTTATATGGCTCCACATTCTTCTGGAGGGTTCAATAGCTTCGTCAGGTTATCTCCTATTGCGGCTGTGAATTGCAATGCTAATAATCCTTCGCATCATTATGTTTCAGCGAAAGAGAAGACTGAACCTCCTCACTTTCTGCCTCCGAGGAGAGTGGGGGGAGACCCTTCGGCTTTTAGGTGTGACAATAGCATTATCTTGCAAGGGAGAGATTCAAGACACTGCTTTGAGAATGGGTATGGTTCTTCTTATAGAAGGGGTCCTCCCCGTGACGAGTTTTGTGTGAGTGGCAGTGTTTCCAAGAACTTTTCTCCTGGTGGTCCTTCTGGTCAAAACGTTGGGGAATTCTCACTGCCCATGCCACTGGATTATTATTCTGTGCCGGACTCTCAGCGTTACATTTACAACCTGGCAAAGGATCAGCACGGTTGTCGTTTTCTGCAGCGGAAGGTTGATGAGGGAAGCTTCGAAGATATGTGTATTGTATTTGAGGGAATCATCGGGAGTGTTGTTGAACTTATGGTGGACTCTTTCGGGAATTATCTGGTGCAGAAGTTGCTCGATGTTTGCACCGATCATCAACGACTGCAGATTGTGCTCATGTTGACTAATCGACCAGGGCAGCTCGTTAGAATCTCTTTGAATACTCACGGTGTCACTGTAAACAGCACGCGGGTGGTGCAGAAGTTGATTGAGACCCTCGATTCCGATGATCAAATTTCATTGGTCAAGTCTGCCATTCAACCGGGTTTTCTTGATCTTATTAAGGACCTGAATGGAAACCACGTCATTCAACGTTGCTTGCAATGCTTCAGCTCTCAAGATAACCAGTTTATCTTTGATGCTTCTGTGAAATATTGTGTTGAAGTAGCTACTCATCAGCATGGATGCTGTGTACTGCAACGCTGTATTTATTACTCCATGGGTAAAAATCGAGATAGGCTGATCTCAGAAATATGCAAGCATGGACTTCTCCTCGCCCAGGATCCATTTGGAAACTATGTTGTTCAATATATTATAGAAACTGATACTCCAACTGCCGTAGCCAAAATGCTTGGTCAGTTTAAAGGGAATTATGTACATTTGTCTACACAGAAATTCAGCAGTCATGTGGTTGAAAAATGTCTCAGAAATGTTGGAGATACGAGGTCGAGGATAGTTCGAGAATTGCTGGCTGCTCCTCATTTTGAACGACTTTTGCAAGATCCGTATGCCAATTATGTCATTCAATCTGCTCTCACCTTCACCAAGGGCCTTCTGCATGCTTCTTTGGTTGATGCAATTCGTAATTACAAAATGTTGCGCTCCAGTCCTTTTTGCAAGAGGATTTTCTCGGGAAATTTGCTGAGGAAGTGA 2022 0.4555 MDAHIMSEDRRATEEGGETRLVGNPNVSHPTAASTPLSCLRVLHPDHVAVGSPVTRVPPYSAPPPSPKFWVDHDPSTLTHTHTNWAHDSSLISDFSKMNLLDQIQTDVDPCPYFNQPGTLPNPYDSGFNETENLPYHHHVNNARLFNEQGILPYHVNNAGLFTESGTLLPYHHHLNNAELFDKGHTFDTPDDHGNLLYHHPVDQRRNQLQATSSGNYPIFRDRYMAPHSSGGFNSFVRLSPIAAVNCNANNPSHHYVSAKEKTEPPHFLPPRRVGGDPSAFRCDNSIILQGRDSRHCFENGYGSSYRRGPPRDEFCVSGSVSKNFSPGGPSGQNVGEFSLPMPLDYYSVPDSQRYIYNLAKDQHGCRFLQRKVDEGSFEDMCIVFEGIIGSVVELMVDSFGNYLVQKLLDVCTDHQRLQIVLMLTNRPGQLVRISLNTHGVTVNSTRVVQKLIETLDSDDQISLVKSAIQPGFLDLIKDLNGNHVIQRCLQCFSSQDNQFIFDASVKYCVEVATHQHGCCVLQRCIYYSMGKNRDRLISEICKHGLLLAQDPFGNYVVQYIIETDTPTAVAKMLGQFKGNYVHLSTQKFSSHVVEKCLRNVGDTRSRIVRELLAAPHFERLLQDPYANYVIQSALTFTKGLLHASLVDAIRNYKMLRSSPFCKRIFSGNLLRK 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02529 673 SUPERFAMILY ARM repeat 352 666 IPR016024 -
Vimu10g02529 673 ProSiteProfiles Pumilio RNA-binding repeat profile. 611 648 IPR001313 GO:0003723
Vimu10g02529 673 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 195 666 - -
Vimu10g02529 673 Pfam Pumilio-family RNA binding repeat 473 503 IPR001313 GO:0003723
Vimu10g02529 673 Pfam Pumilio-family RNA binding repeat 547 568 IPR001313 GO:0003723
Vimu10g02529 673 Pfam Pumilio-family RNA binding repeat 356 388 IPR001313 GO:0003723
Vimu10g02529 673 Pfam Pumilio-family RNA binding repeat 621 637 IPR001313 GO:0003723
Vimu10g02529 673 Pfam Pumilio-family RNA binding repeat 392 421 IPR001313 GO:0003723
Vimu10g02529 673 Pfam Pumilio-family RNA binding repeat 580 613 IPR001313 GO:0003723
Vimu10g02529 673 Pfam Pumilio-family RNA binding repeat 508 542 IPR001313 GO:0003723
Vimu10g02529 673 Pfam Pumilio-family RNA binding repeat 446 465 IPR001313 GO:0003723
Vimu10g02529 673 CDD Pumilio 356 667 IPR033712 GO:0003723
Vimu10g02529 673 MobiDBLite consensus disorder prediction 1 17 - -
Vimu10g02529 673 FunFam Pumilio homolog 9 342 673 - -
Vimu10g02529 673 Gene3D - 344 669 IPR011989 -
Vimu10g02529 673 ProSiteProfiles Pumilio RNA-binding repeat profile. 348 386 IPR001313 GO:0003723
Vimu10g02529 673 ProSiteProfiles Pumilio RNA-binding repeat profile. 504 539 IPR001313 GO:0003723
Vimu10g02529 673 SMART pum_5 613 648 IPR001313 GO:0003723
Vimu10g02529 673 SMART pum_5 504 539 IPR001313 GO:0003723
Vimu10g02529 673 SMART pum_5 431 466 IPR001313 GO:0003723
Vimu10g02529 673 SMART pum_5 576 610 IPR001313 GO:0003723
Vimu10g02529 673 SMART pum_5 351 386 IPR001313 GO:0003723
Vimu10g02529 673 SMART pum_5 387 422 IPR001313 GO:0003723
Vimu10g02529 673 SMART pum_5 540 575 IPR001313 GO:0003723
Vimu10g02529 673 SMART pum_5 468 503 IPR001313 GO:0003723
Vimu10g02529 673 ProSiteProfiles Pumilio RNA-binding repeat profile. 468 503 IPR001313 GO:0003723
Vimu10g02529 673 MobiDBLite consensus disorder prediction 1 33 - -
Vimu10g02529 673 ProSiteProfiles Pumilio RNA-binding repeat profile. 387 423 IPR001313 GO:0003723
Vimu10g02529 673 ProSiteProfiles Pumilio RNA-binding repeat profile. 540 575 IPR001313 GO:0003723
Vimu10g02529 673 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 327 673 IPR033133 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02529 Vimu-Chr10 36512708 36515494 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02529 - - pvu:PHAVU_009G030400g 1122.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02529 10 36512708 36515494 Vimu10g02529 10 36512708 36515494 ECH
Vimu1g01836 1 22201466 22202320 Vimu10g02529 10 36512708 36515494 PCT