Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01831 ATGGCAGCCAAGGCAAAGAACAACAAGGTAGGGAGTGAATTGGGGTGTGGCCTCATGGGTAGAATTCTCCACCTCAAAAGCCACAAGCTCAGAAAAGCCTCTGTTCACTCCCTACCCTTGAAGAATCCACTGAGTGATGATGATGGCAAAAGTCAAGAATCAAAGAAGACCCCAAGTGAAGAATTAAAGGCTACCAAAAATAGCTGCACTGAGCCACTCAGATTGAGTGATGCACAGCAGAAACCGGCCCGAAAGAGTGCCTCTGTTCATCAACAACAACTTAGTACGTACCCAAACAGTCAAAATCAAAGGCATTCGGATGTTGTTGCAAGAAGCTCAACATCATCATTATCATCTCCTAGAACTTCAATTTCAACTCACACTAAGGTTCAACAAAACAAGGACAAGAATCATGAGAGCAAGCCATATAGAGACCCCACTGAAAATTCTCTTGCACTTGCTAGGATAAGCACGGGCAATGAGAACAATAAGTCTCAATTGAAACTCACTGGGAATTTGCTACTGAATAACACCCCAAGGAGAAAGAGTGTGGAGTACATGCCTAAAAATGCAGAGTTGAACTCTGTGCCCGTTTCCTACTCCAATACAAGCAAAGGCTTGATGGGGAATATCATGAGAAGGAACAGCACTGGCAATGAGCTTGGACAGTTTTTTAGTCCAAGACAGAAAAAAGTGGACCCTGAAGTGTTGAAATCCATGGGAAATGAAGCATACAAGCAGGGAAGATTTGAAGAGGCTTTGGCTTTGTATGACAGAGCAATTGCTCTTGATTCAAATATGGCAACGTACCATTGCAACAGGAGTGCAGCTTTAATTGGCTTAGGAAGGCTTGAAGAAGCAATTTTTGAGTGTGAGGAATCTATCAAACTGGACCCGTCGTATGTCAGAGCTCACAACCGTTTGGCCACAATATATTTCAGGTACTCAGTCATAATAATGCTTTATTCAATGATGTTAAGTATGCTCTGCATCGTAATAGTATTCTGTTTGGTATTTTTACTTATGACACTGCAAATTTGA 1041 0.4207 MAAKAKNNKVGSELGCGLMGRILHLKSHKLRKASVHSLPLKNPLSDDDGKSQESKKTPSEELKATKNSCTEPLRLSDAQQKPARKSASVHQQQLSTYPNSQNQRHSDVVARSSTSSLSSPRTSISTHTKVQQNKDKNHESKPYRDPTENSLALARISTGNENNKSQLKLTGNLLLNNTPRRKSVEYMPKNAELNSVPVSYSNTSKGLMGNIMRRNSTGNELGQFFSPRQKKVDPEVLKSMGNEAYKQGRFEEALALYDRAIALDSNMATYHCNRSAALIGLGRLEEAIFECEESIKLDPSYVRAHNRLATIYFRYSVIIMLYSMMLSMLCIVIVFCLVFLLMTLQI 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01831 346 Pfam TPR repeat 241 278 - -
Vimu1g01831 346 MobiDBLite consensus disorder prediction 34 148 - -
Vimu1g01831 346 SUPERFAMILY TPR-like 230 314 IPR011990 GO:0005515
Vimu1g01831 346 MobiDBLite consensus disorder prediction 63 130 - -
Vimu1g01831 346 SMART tpr_5 268 301 IPR019734 GO:0005515
Vimu1g01831 346 SMART tpr_5 234 267 IPR019734 GO:0005515
Vimu1g01831 346 MobiDBLite consensus disorder prediction 131 145 - -
Vimu1g01831 346 MobiDBLite consensus disorder prediction 46 62 - -
Vimu1g01831 346 ProSiteProfiles TPR repeat profile. 234 267 IPR019734 GO:0005515
Vimu1g01831 346 Gene3D Tetratricopeptide repeat domain 215 317 IPR011990 GO:0005515
Vimu1g01831 346 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 4 315 IPR044534 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01831 Vimu-Chr1 21931871 21932911 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01831 K09527 - gmx:100782846 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01831 1 21931871 21932911 Vimu10g02534 10 36617357 36620723 PCT