Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02534 ATGGAAGGGAAAGCCAAGGACAAGGTGGACTTTGACTTTGGTTGCGGTTTCGTGGGGAGAATTTTCCACCTCAAAACCAATTACAGGACGAGAAAATCCTCTGTTCATTCACTGCCCATGAAGCCTTGCAACACTGCACAACAGAGAGACCAGGCCAAAAACGACTTCAAACCCCATCTAAACCATGAACCAAAGGTTCCACGAGATACCGCCAACGGAATTACACTGAAAGGAGAGCAGAATCCTTCCAGAAAGAGTACCTCTAGTCACCGGGCACCTTCTGCATGCCGAAACATTCCAAATGGGAGACCCTCGGACGCTGCAAGAACCTCAGTTCAACAAAACCATGACCCAAATGACGAGAGTAAGCAACAGAAAGAGAACTCTGGTAATTCTCTGGAACTTGCAAGGATAAGCACAGGTGCCAGTCATCATCAGAACCACGATACCAAATCCCCAGCCAAAGATTTTGTGTTACCGATCACTGGGAATTTGCTTGTGAATAACAGCCCCAGAACTAGTGTTACCAAGAGCAAGGAGTTGAACTCCATGTCTAGTTACAGTAGTAACGGCAACAAAGGTGTGATGGGGAATATCATGAGGAAGAACAGTGATGAACTTGCGCAATTTCGGAGTCCAAGGAACGGCAGAGCGGACCCTGAGGTGATGAAGTCCATGGGGAATGAAGCTTACAAGCTCGGAAGATTTGAAGAAGCTTTGGTTTTGTATGACAGAGCCATTACTCTTGACTCCAATAAGGCAACGTATCACTGCAATAAGAGCGCAGCTTTGATCGGTTTGGGAAGGTTTCTGCAGGCAATTGCTGAGTGCGAGGAAGCTATCAGCCCACAACCGTTTGGCAACAATTTATTTCAGGTACTCAACGATAATGATGATGATGGTGTTGGTAATATGCTTCGTTCAATTTTCCATGGTTTAATACTGGGAGAAGCAGAAAAGACGCTGAATTGCAATGAAACAAGTCCATGTGTTGATTCTGTTCTCAGTTTACAAGCTCAGAATCTTCAAAATCACCTTAACAAATGCACTGAAGCTCGAAAAGTCAAAGACTGGAAAGTTATATTGAAGGAAACACAGGCTGCAGTATCTTTAGGTGCCGATTCAGCTCCAGAGGTCTATTGTTTACAAACTGAAGCCTTGCTGAAGCTCCAAAGACATCAAGAGGCATACGCTACCTTCGAGAAAATGCCAAAATTTGACCTTGATAGTTGTAAGAAAATATTCGGTCCAGCTCGTAGTGCTTACCTCATGATGATAGCTGCTCAAATTTACTTGGAAGCCGGCAGGTTTGAGGATGCTGTAACAACATCTGAGAAAGCGGCTAAACTAGATCCAAGTAGCTTTGAGGTGAATGCAGTGGTGAGGAGAGCCAGAGCAGTGACATCAGCCAGAATGAGTGGTAACTTACTCTTCAAGGCATCAAAATTCACGGAAGCATGCGCTGTGTACAATGAAGGACTAGAGCATGATCCTTACAACTCAGTTCTGCTATGCAATAGGGCAGCATGTCGTTCCAAGCTAGGTCAATTTGAGAAAGCAATTGAAGATTGCAACGTGGCACTTATACTTCAGCCTAGCTATAGCAAGGCGAGGTTGAGGAGGGCAGATTGCAATGCCAAGTTGGAACGATGGGAAGCTGCGATTCAAGACTATGAAATGCTATTAAGAGAAAAACCAGGGGATGAGGAGGTGGCCAGAGCTCTGTTTGAGACTCAGCTTCAACTCAAGGTGCTGCGCGGAGAAGATATTAAGGACTTGAAATTTGGTTCAAATTTGTTTCTCATCTCAAGCAATGATCGGTTTAGACATTACGTAACATCACCAGGGATGTCTGTGGTACTGTTTTGCAACAAGGCAACCCACAAACAAGTGTTGTTGGTGTTGGAGCAAACCTGCAAGAGATTTCCGTCAGTTAATTTTCTTAAGGTGGAGATTGAAGACCACCCCTACTTGGCAAAATCAGAAGGTGTGAACTGCATCCCTGCCTTTAAAATATACAAGAATGGATCAAGGGTGAAAGAAATTCCAGGCAACAACCACGAGTTGAAATGGGGGAAGGTTAGATTTGTCAGAATGAAAAAGAAGCAGTCCAGAATAAATCAAGCTACCTGCTTCATAAATTCGGTCACCTTGCTTACATAA 2163 0.4429 MEGKAKDKVDFDFGCGFVGRIFHLKTNYRTRKSSVHSLPMKPCNTAQQRDQAKNDFKPHLNHEPKVPRDTANGITLKGEQNPSRKSTSSHRAPSACRNIPNGRPSDAARTSVQQNHDPNDESKQQKENSGNSLELARISTGASHHQNHDTKSPAKDFVLPITGNLLVNNSPRTSVTKSKELNSMSSYSSNGNKGVMGNIMRKNSDELAQFRSPRNGRADPEVMKSMGNEAYKLGRFEEALVLYDRAITLDSNKATYHCNKSAALIGLGRFLQAIAECEEAISPQPFGNNLFQVLNDNDDDGVGNMLRSIFHGLILGEAEKTLNCNETSPCVDSVLSLQAQNLQNHLNKCTEARKVKDWKVILKETQAAVSLGADSAPEVYCLQTEALLKLQRHQEAYATFEKMPKFDLDSCKKIFGPARSAYLMMIAAQIYLEAGRFEDAVTTSEKAAKLDPSSFEVNAVVRRARAVTSARMSGNLLFKASKFTEACAVYNEGLEHDPYNSVLLCNRAACRSKLGQFEKAIEDCNVALILQPSYSKARLRRADCNAKLERWEAAIQDYEMLLREKPGDEEVARALFETQLQLKVLRGEDIKDLKFGSNLFLISSNDRFRHYVTSPGMSVVLFCNKATHKQVLLVLEQTCKRFPSVNFLKVEIEDHPYLAKSEGVNCIPAFKIYKNGSRVKEIPGNNHELKWGKVRFVRMKKKQSRINQATCFINSVTLLT 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02534 720 Gene3D Glutaredoxin 594 696 - -
Vimu10g02534 720 Pfam TPR repeat 227 262 - -
Vimu10g02534 720 SUPERFAMILY TPR-like 331 458 IPR011990 GO:0005515
Vimu10g02534 720 ProSiteProfiles TPR repeat profile. 220 253 IPR019734 GO:0005515
Vimu10g02534 720 SMART tpr_5 377 410 IPR019734 GO:0005515
Vimu10g02534 720 SMART tpr_5 421 454 IPR019734 GO:0005515
Vimu10g02534 720 SMART tpr_5 220 253 IPR019734 GO:0005515
Vimu10g02534 720 SMART tpr_5 467 500 IPR019734 GO:0005515
Vimu10g02534 720 SMART tpr_5 254 287 IPR019734 GO:0005515
Vimu10g02534 720 SMART tpr_5 501 534 IPR019734 GO:0005515
Vimu10g02534 720 SMART tpr_5 535 568 IPR019734 GO:0005515
Vimu10g02534 720 MobiDBLite consensus disorder prediction 31 51 - -
Vimu10g02534 720 ProSiteProfiles TPR repeat profile. 421 454 IPR019734 GO:0005515
Vimu10g02534 720 MobiDBLite consensus disorder prediction 74 95 - -
Vimu10g02534 720 Pfam Tetratricopeptide repeat 490 522 - -
Vimu10g02534 720 Coils Coil 541 561 - -
Vimu10g02534 720 SUPERFAMILY TPR-like 472 583 IPR011990 GO:0005515
Vimu10g02534 720 Gene3D Tetratricopeptide repeat domain 317 586 IPR011990 GO:0005515
Vimu10g02534 720 Pfam Tetratricopeptide repeat 425 453 IPR019734 GO:0005515
Vimu10g02534 720 CDD TRX_family 608 686 - -
Vimu10g02534 720 MobiDBLite consensus disorder prediction 30 132 - -
Vimu10g02534 720 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 16 690 IPR044534 -
Vimu10g02534 720 SUPERFAMILY Thioredoxin-like 600 684 IPR036249 -
Vimu10g02534 720 SUPERFAMILY TPR-like 219 285 IPR011990 GO:0005515
Vimu10g02534 720 MobiDBLite consensus disorder prediction 175 196 - -
Vimu10g02534 720 MobiDBLite consensus disorder prediction 52 66 - -
Vimu10g02534 720 MobiDBLite consensus disorder prediction 104 118 - -
Vimu10g02534 720 Pfam Thioredoxin 630 687 IPR013766 -
Vimu10g02534 720 Gene3D Tetratricopeptide repeat domain 220 292 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02534 Vimu-Chr10 36617357 36620723 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02534 K09527 - gmx:100814381 1072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02534 10 36617357 36620723 Vimu10g02534 10 36617357 36620723 ECH
Vimu1g01831 1 21931871 21932911 Vimu10g02534 10 36617357 36620723 PCT