LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu1g01821	ATGGCTCTCCCTCCCTCTTCAGTTCCCACTACATTCTTCATCACCTCTCTCCTTCTAACTCTCCTCTTCGCCGAGTCAACTCAGCCTCCTCATTCCTGTGACTCCTCCTCCAACTCACCCTACTATGCATTCTGCAACACCAAGCTTCCCATCCCCCAGAGAGCAAAAGACCTGGTCTCGAGACTCACCCTCGATGAGAAACTCGCCCAACTCGTTAACTCAGCACCCGCGATTCCCCGACTCGGCATCCCCAAATACCAGTGGTGGAGCGAAGCCTTGCACGGCGTCGCCGACGCAGGCCTCGGCATCCGATTCAATGGCACCATCAAATCCGCCACCAGCTTCCCTCAAGTCATTCTCACTGCGGCTTCCTTCGATCAAAACCTCTGGTACAAAATCAGCAAGGCGATTGGCCGGGAAGCGAGGGCGGTGTACAATGCGGGGCAAGCGTTAGGAATGACGTTTTGGGCTCCGAACATTAACGTTTTCAGGGATCCACGGTGGGGGAGGGGACAAGAGACGGTTGGAGAAGACCCATTAATGAATGCAAAGTATAGTGTGGCTTACGTGAGAGGGCTTCAAGGGGATTCCTTTGAAGGAGGGAAACTTGGGGAGAGCCTTCAAGCTTCTGCGTGTTGCAAGCACTTCACAGCCTATGATATTGACCAATGGAAGGGCCTCGATCGCTTTGTCTTCGATGCTCGTGTCTCAAAGCAAGATTTGGCAGACACATACCAACCTCCATTCCAGAGTTGCATTCAGCAAGGTCGAGCCAGTGGCATAATGTGTGCTTACAACCGTGTCAATGGGATTCCAAACTGTGCAGATTTTAATCTCTTAACCAAAACTGCAAGGCAACAATGGAAATTTGATGGATATATTACGTCAGATTGTGGAGCAGTCTCTATCATACACGACAAACAAGGTTATGCAAAAACAGCAGAAGATGCTATAGCCGATGTCTTTAGGGCAGGGATGGATGTGGAATGTGGTGATTACATAACTAAGCATGCAAAATCAGCAGTTTCGCAGAAAAAGTTGCCCATATCTCAAATAGACCGCGCTCTTCAGAACCTATTCTCAATAAGAATGAGGCTAGGCCTATTTGATGGGAACCCCACTAAACTTCCCTATGGCACCATTGGTCCCAACGAAGTGTGTTCCAAAGAACACCTCCAACTGGCTCTTGAAGCAGCAAGAGATGGTATAGTCCTTCTGAAGAACACTGACTCACTTCTCCCACTTCCAAAAACAAGCCATAGTGTTGCTGTGATTGGCCCAAATGCCAATGCCTCGTCACTAGTTTCCCTAGGAAACTATTATGGTCGTCCTTGCAAATTGGTGACCCTTTTGCAAGGCTTTGAAGGCTACGCTAAGGACACCACTTACCACCCTGGGTGTGATGATGGCCCACAATGTGCCTCTGCACGGATTGAAGAGGCAGTGGAGGTTGCGAAAAAGGTAGATTATGTGGTGCTTGTTATGGGGTTGGATCAAAGTCAAGAGAGGGAGTCACATGACAGAGAATATCTAGGTTTGCCAGGGAAGCAAGAAGAGTTGATCAAGAGTGTGGCCAAAGCTTCTAAGAGGCCAGTTGTTTTGGTGCTGTTGTGTGGAGGGCCAGTGGATATCACTTCAGCCAAGTTTGATAACAAAGTTGGAGGAATCTTGTGGGCAGGGTACCCTGGGGAACTTGGAGGAGTGGCCCTGGCTCAGGTTATCTTTGGTGACCATAACCCAGGTGGTAAACTACCAATTACATGGTACCCTAAGGATTTCATCAGAATACCAATGACAGATATGAGGATGAGAGCTGATTCAGCCTCAGGTTACCCAGGGAGAACCTACAGATTTTACACTGGTCCAAAGGTCTATGAATTCGGCTATGGCCTAAGCTACACAAAATATTCCTACAATCTCCTCTCTCTCTCACAAAACACCCTCCACATCAACCAATCCTCTACCCATTTGATGACTGAAAATTCTGAAACCATCCGTTACAAACTGGTTGCAGACTTGGGAGAACAAACATGCCAATCCATGTCGTTGTCACTCACTTTGGGGGTCACAAATCATGGTAAAATGGCAGGGAAGCATCCCGTGTTGTTGTTTTTGAAGAAGGGACAAGTGAGAAACGGGAATCCGGTGAAACAATTGGTGGGTTTTCAAAGTGTGAAGTTAAATGCAGGGGAAACTGCTCAAGTGGGATTTGAGCTAAGCCCTTGTGAGCATCTTAGCGTGGCAAACGAGGCTGGTTCATTGGTGATTGAAGAAGGCTCTTATTTGTTGCTTGTGGGGGACCAAGAGTACCCATTAAAAGTCACAGTTTGA	2331	0.4801	MALPPSSVPTTFFITSLLLTLLFAESTQPPHSCDSSSNSPYYAFCNTKLPIPQRAKDLVSRLTLDEKLAQLVNSAPAIPRLGIPKYQWWSEALHGVADAGLGIRFNGTIKSATSFPQVILTAASFDQNLWYKISKAIGREARAVYNAGQALGMTFWAPNINVFRDPRWGRGQETVGEDPLMNAKYSVAYVRGLQGDSFEGGKLGESLQASACCKHFTAYDIDQWKGLDRFVFDARVSKQDLADTYQPPFQSCIQQGRASGIMCAYNRVNGIPNCADFNLLTKTARQQWKFDGYITSDCGAVSIIHDKQGYAKTAEDAIADVFRAGMDVECGDYITKHAKSAVSQKKLPISQIDRALQNLFSIRMRLGLFDGNPTKLPYGTIGPNEVCSKEHLQLALEAARDGIVLLKNTDSLLPLPKTSHSVAVIGPNANASSLVSLGNYYGRPCKLVTLLQGFEGYAKDTTYHPGCDDGPQCASARIEEAVEVAKKVDYVVLVMGLDQSQERESHDREYLGLPGKQEELIKSVAKASKRPVVLVLLCGGPVDITSAKFDNKVGGILWAGYPGELGGVALAQVIFGDHNPGGKLPITWYPKDFIRIPMTDMRMRADSASGYPGRTYRFYTGPKVYEFGYGLSYTKYSYNLLSLSQNTLHINQSSTHLMTENSETIRYKLVADLGEQTCQSMSLSLTLGVTNHGKMAGKHPVLLFLKKGQVRNGNPVKQLVGFQSVKLNAGETAQVGFELSPCEHLSVANEAGSLVIEEGSYLLLVGDQEYPLKVTV	776

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu1g01821	776	Pfam	Fibronectin type III-like domain	701	768	IPR026891	-
	Vimu1g01821	776	SUPERFAMILY	(Trans)glycosidases	42	402	IPR017853	-
	Vimu1g01821	776	Pfam	Glycosyl hydrolase family 3 N terminal domain	108	360	IPR001764	GO:0004553\|GO:0005975
	Vimu1g01821	776	Gene3D	-	388	633	IPR036881	GO:0004553\|GO:0005975
	Vimu1g01821	776	SMART	Fn3_like_2	699	769	IPR026891	-
	Vimu1g01821	776	SUPERFAMILY	Beta-D-glucan exohydrolase, C-terminal domain	403	636	IPR036881	GO:0004553\|GO:0005975
	Vimu1g01821	776	PRINTS	Glycosyl hydrolase family 3 signature	283	301	IPR001764	GO:0004553\|GO:0005975
	Vimu1g01821	776	PRINTS	Glycosyl hydrolase family 3 signature	209	225	IPR001764	GO:0004553\|GO:0005975
	Vimu1g01821	776	PRINTS	Glycosyl hydrolase family 3 signature	115	134	IPR001764	GO:0004553\|GO:0005975
	Vimu1g01821	776	Pfam	Glycosyl hydrolase family 3 C-terminal domain	403	633	IPR002772	GO:0004553\|GO:0005975
	Vimu1g01821	776	Gene3D	Immunoglobulins	634	776	IPR013783	-
	Vimu1g01821	776	Gene3D	-	54	376	IPR036962	GO:0004553\|GO:0005975
	Vimu1g01821	776	Coils	Coil	772	776	-	-
	Vimu1g01821	776	PANTHER	SUGAR HYDROLASE-RELATED	20	772	IPR044993	GO:0009044\|GO:0045493
	Vimu1g01821	776	FunFam	probable beta-D-xylosidase 7	54	375	-	-
	Vimu1g01821	776	FunFam	probable beta-D-xylosidase 2	388	634	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu1g01821	Vimu-Chr1	21370731	21376070	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu1g01821	25	776	Glycoside Hydrolase	AT1G78060	64.597	0.0	1014

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu1g01821	-		-	gmx:100780688	1398.65

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu1g01821	1	21370731	21376070	Vimu1g01821	1	21370731	21376070	ECH
	Vimu1g01821	1	21370731	21376070	Vimu10g02546	10	36788532	36790037	PCT