Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02546 ATGGATGTGGAATGTGGTAGTTATCTGACCGGTCATGCTGAATCGGCAGTGTTGCAGAAAAAAGTATCCATGTCTGAAATAGACCGTGCCCTTCACAACCTGTTTTCTATTAGAATGAGGCTTGGTCTGTTTGGTGGAAATCTAAGCAGTCTCCCATTTGGTATGATTGGTCCGAATCATGTGTGTTCCAAAGAGCACCAATATCTGGCTCTTGAAGCTGCAAGAAATGGCATTGTCCTCTTAAAAAACTCTCCCACACTTCTACCACTTCCCAAAACAAGCCCCAGTATTTCCTTAGCAGTCATAGGTCCCAATGCCAATGCTTCTCCACTAACTCTTCTTGGAAACTATGCTGGTCCTCCTTGTAAATTTGTCACAATATTGCAAGGTTTTCAGCACTACGTTAAGAACGCCGTTTATCATCCTGGGTGTGATGGCGGACCAAAGTGTTCTTCGGCTAAAATTGAGCAGGCAGTAGAAGTTGCAAAAAAAGTGGATTATGTGGTCCTGGTTATGGGATTGGATCAAAGTGAAGAGAGGGAAGAACGTGATCGCATTCATCTAGACTTGCCGGGCAAGCAACTTGAACTCGTCAACAGCGTTGCTGAAGCTTCTAAAAAACCAGTTATTTTGGTGCTGCTTTGTGGAGGGCCTGTAGATATCAGTTCAGCTAAGTATAACCACAAAATTAGAGGCATCCTCTGGGCTGGTTATCCCGGAGAATTTGGAGGCATTGCACTTGCACAGATTATCTTTGGCGACCACAACCCAGGAGGAAGACTTCCAGTTACTTGGTACCCAAAAGATTACATCAAAGTACCCATGACAGACATGAGAATGAGAGCCGATCCTTCTACGGGCTATCCTGGGAGAACTTACCGATTTTACAAAGGTCCAAAAGTGTATGAATTTGGCTATGGACTAAGCTATTCGAAGTATTCCTATGAGTTTGTTTCTGTTACACATGACAAGCTTCACTTGAACCAGTCATCCACTCATTTCATGGTTGAAAATTCAGAAACCGTAAGGTACAAACTAGTTTCGGAGTTGGGAGAAAAAACCTGCCAAAGCATGTCACTCTCGGTCACTGTGAGAGTTCAAAATCATGGAAGCATGGTGGGGAAGCATTCTGTATTGCTGTTTATGAGGCCTAAAATCCAGAAAAGTGGAAACCCTGTGAAACAGTTGGTTGGTTTCCAGAGTGTGATGCTTGATGCAGGGGAAATGACTCATGTTGGATTTGCGGTGAGTCCTTGCGAACATCTTAGTAGAGCAAATGAAGCTGGTGCAATGATTATTGAAGAAGGCTCTCAAGTGTTGCTTGTGGATGATCAAGAGCACCCGATAGATATAATTGTTTGA 1362 0.4354 MDVECGSYLTGHAESAVLQKKVSMSEIDRALHNLFSIRMRLGLFGGNLSSLPFGMIGPNHVCSKEHQYLALEAARNGIVLLKNSPTLLPLPKTSPSISLAVIGPNANASPLTLLGNYAGPPCKFVTILQGFQHYVKNAVYHPGCDGGPKCSSAKIEQAVEVAKKVDYVVLVMGLDQSEEREERDRIHLDLPGKQLELVNSVAEASKKPVILVLLCGGPVDISSAKYNHKIRGILWAGYPGEFGGIALAQIIFGDHNPGGRLPVTWYPKDYIKVPMTDMRMRADPSTGYPGRTYRFYKGPKVYEFGYGLSYSKYSYEFVSVTHDKLHLNQSSTHFMVENSETVRYKLVSELGEKTCQSMSLSVTVRVQNHGSMVGKHSVLLFMRPKIQKSGNPVKQLVGFQSVMLDAGEMTHVGFAVSPCEHLSRANEAGAMIIEEGSQVLLVDDQEHPIDIIV 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02546 453 SMART Fn3_like_2 376 446 IPR026891 -
Vimu10g02546 453 Pfam Fibronectin type III-like domain 377 443 IPR026891 -
Vimu10g02546 453 PANTHER SUGAR HYDROLASE-RELATED 1 449 IPR044993 GO:0009044|GO:0045493
Vimu10g02546 453 FunFam probable beta-D-xylosidase 2 63 311 - -
Vimu10g02546 453 Pfam Glycosyl hydrolase family 3 C-terminal domain 78 310 IPR002772 GO:0004553|GO:0005975
Vimu10g02546 453 SUPERFAMILY (Trans)glycosidases 1 76 IPR017853 -
Vimu10g02546 453 Gene3D - 63 311 IPR036881 GO:0004553|GO:0005975
Vimu10g02546 453 Gene3D Immunoglobulins 338 452 IPR013783 -
Vimu10g02546 453 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 78 313 IPR036881 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02546 Vimu-Chr10 36788532 36790037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02546 1 453 Glycoside Hydrolase AT1G78060 60.879 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02546 - - gmx:100801565 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02546 10 36788532 36790037 Vimu10g02546 10 36788532 36790037 ECH
Vimu1g01821 1 21370731 21376070 Vimu10g02546 10 36788532 36790037 PCT