Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01818 ATGAGTGTGGATCCAAAGAAAGCGGCCACTACTGGCCAGGAGAAGATGTTAACATCACCAGAACAGCAGGCATTGGTATGTCCAATCAATGAGGTGAGAAGGTTAATTGGGCCACAGTCTGGTAAGGCATCTATTTTTTGTTCTGATGCCTGCATCTCAAGGTATTTAAGGGCACGGAATTGGAATGTCAAGAAGGCAGCTAAAATGTTGAAAGTGACCCTGAAATGGAGAGAAGAATACAAACCGGAAGAAATCCGCTGGGAAGATGTTGCTCATGAAGCAGAGACAGGAAAAATCTATAGATCAAACTATATTGACAAGCATGGGAGAACTGTCCTAGTAATGAGGCCTAGCCGACAGAACTCAAAGTCAACTAAAGGACAAATTAAATATTTGGTATACTGCATGGAGAATGCTATTTTTAATCTTCCACCAGAACAAGAACAAATGGTCTGGTTGATTGACTTCCAGGGTTTCAATATGTCACATATATCAATAAAGGTGACGCGTGAAACTGCACATGTATTACAAGAACATTATCCTGAACGCCTGGGTCTGGCAATACTTTACAATGCACCCAAGTTCTTTGAACCATTTTTCACGATGGTAAAGCCGATTCTAGAGACTAAGACTTATAATAAAGTCAAGTTCGCATACTCGGATGATCAAAACACCAAGAAGATTATGGAGGATTTGTTTGACTTTGACCAACTTGAATCTGCATTTGGTGGGAATGATGATACAGGATTTGACATAAATAAATACGCTGATAGAATGAAAGAGGATGACAAGAAAATTCCTGCTTTCTGGACTACGGAAAACACTCCGTCATCAGTTCCAACTCATGTTCCTTCTTTAGATTCTTCTAGGTTAGACTCAAATACTGATGATGGTTCGGACAATGAGAAACTAGACTCTTTCCCTGACCTCGTGGTAGACACTGGTATTATTAACCCGAACCAGAAAAGCTTGGTTAATGAAGGAGAAAGAAAAGCCGGTGCAGATTAG 1008 0.4038 MSVDPKKAATTGQEKMLTSPEQQALVCPINEVRRLIGPQSGKASIFCSDACISRYLRARNWNVKKAAKMLKVTLKWREEYKPEEIRWEDVAHEAETGKIYRSNYIDKHGRTVLVMRPSRQNSKSTKGQIKYLVYCMENAIFNLPPEQEQMVWLIDFQGFNMSHISIKVTRETAHVLQEHYPERLGLAILYNAPKFFEPFFTMVKPILETKTYNKVKFAYSDDQNTKKIMEDLFDFDQLESAFGGNDDTGFDINKYADRMKEDDKKIPAFWTTENTPSSVPTHVPSLDSSRLDSNTDDGSDNEKLDSFPDLVVDTGIINPNQKSLVNEGERKAGAD 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01818 335 SMART CRAL_TRIO_N_2 48 73 IPR011074 -
Vimu1g01818 335 Pfam CRAL/TRIO, N-terminal domain 48 71 IPR011074 -
Vimu1g01818 335 SUPERFAMILY CRAL/TRIO N-terminal domain 29 89 IPR036273 -
Vimu1g01818 335 Pfam CRAL/TRIO domain 96 244 IPR001251 -
Vimu1g01818 335 Gene3D - 2 274 IPR036865 -
Vimu1g01818 335 MobiDBLite consensus disorder prediction 293 307 - -
Vimu1g01818 335 MobiDBLite consensus disorder prediction 270 292 - -
Vimu1g01818 335 PANTHER GH16843P 5 275 - -
Vimu1g01818 335 SMART sec14_4 93 247 IPR001251 -
Vimu1g01818 335 SUPERFAMILY CRAL/TRIO domain 87 265 IPR036865 -
Vimu1g01818 335 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 87 250 IPR001251 -
Vimu1g01818 335 CDD SEC14 95 245 IPR001251 -
Vimu1g01818 335 MobiDBLite consensus disorder prediction 270 335 - -
Vimu1g01818 335 FunFam Phosphatidylinositol transfer protein 3 5 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01818 Vimu-Chr1 21170106 21178532 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01818 K26544 - gmx:100780151 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01818 1 21170106 21178532 Vimu1g01818 1 21170106 21178532 ECH
Vimu1g01818 1 21170106 21178532 Vimu10g02548 10 36812332 36813090 PCT