Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02548 ATGATAAAGAGACAGGTTAAGCATTTTGTACACTGCTTCGAGAATGCCATTTTAAACCTTCCACCACACCAAGAACAGGTGGTTTGGCTGATAGATTTAGAGGGTATCAAGATGTCGGATATAGCGTTCAAAACGTCACGTGAAATTGTCCATGTATTACAAAGCTATTATCCAAAGCGCTTGGGTTTGATAATTCTGTTCAATGCGCCTGTGATGATCTTCCAGCCATTCTTCAAGATGACGAGGCCCTTTTTGGAAACTGAAATTTACAATAAAATAAAGTTTTGCTATTCGGACGACCACAACTCAAAGAAGATTTTGGAGGATTTATTTGATATGGATAAACTTGAATCTGCATTTGGTGGGAATGGTGACACAGGATTTGACAAAAATAAATATGCTGAGAGAATGAAAGAAGATGACAGCAAGTTTCTTTCATTCTGA 444 0.3761 MIKRQVKHFVHCFENAILNLPPHQEQVVWLIDLEGIKMSDIAFKTSREIVHVLQSYYPKRLGLIILFNAPVMIFQPFFKMTRPFLETEIYNKIKFCYSDDHNSKKILEDLFDMDKLESAFGGNGDTGFDKNKYAERMKEDDSKFLSF 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02548 147 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 1 128 IPR001251 -
Vimu10g02548 147 CDD SEC14 3 123 IPR001251 -
Vimu10g02548 147 SUPERFAMILY CRAL/TRIO domain 3 141 IPR036865 -
Vimu10g02548 147 SMART sec14_4 1 125 IPR001251 -
Vimu10g02548 147 Pfam CRAL/TRIO domain 3 122 IPR001251 -
Vimu10g02548 147 Gene3D - 2 145 IPR036865 -
Vimu10g02548 147 PANTHER GH16843P 3 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02548 Vimu-Chr10 36812332 36813090 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02548 K26544 - gmx:100802091 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01818 1 21170106 21178532 Vimu10g02548 10 36812332 36813090 PCT